Oncorhynchus tshawytscha (Chinook salmon): 112232421
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Entry
112232421 CDS
T05605
Name
(RefSeq) myocyte-specific enhancer factor 2D homolog isoform X1
KO
K09262
MADS-box transcription enhancer factor 2D
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
112232421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112232421
04131 Membrane trafficking [BR:
otw04131
]
112232421
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
MADS-box regulators of differentiation, MEF-2
112232421
Membrane trafficking [BR:
otw04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Selective cargos
112232421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRF-TF
HJURP_C
Motif
Other DBs
NCBI-GeneID:
112232421
NCBI-ProteinID:
XP_042151458
LinkDB
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Position
LG13:complement(32495266..32522569)
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AA seq
569 aa
AA seq
DB search
MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST
DMDKVLLKYTEYNEPHESRTNADIIETLRKKGFSGCESPEPDGEDSIDQSPLNDDKYRKT
TEDLDILFKRYGVSSSVPPPTFSVPVTVQASNQNALQFSNPGNAMVTTSYVTSSSLSDNH
HLSPQPPALQRSTGSPGLPQRPASAGAMLGGDLNNSNGGCPSPVPNGYISARASPGLLSV
SNGNSLGKVVPAKSPPPPQSPQMVNSRKPDIRVITTQGGKSLMQMTDDELEMVSENAQRL
AGAQVTQMLTTPVVSVTTPSLLAQGMPFSAMPTAYNTEYQLTSADITALHALASPGGLLQ
GNTPWQQSLSQQQHQQQQQLSLASLSNLVMWGMDKQSGELSSQISSLAANLSASQSNLLL
GRDEWLGRPVGHIPQGAMLTVNTNSNVSIKSEPISPGRDRHSPCPPPPSSGGGIQTTVPP
PQYPGSLLCLEPPTGRSPAHSLSSNGSSYEGNDRDDPGAGSGIGGSAVGNRGRSLPPDFS
PSVELLRAQNEVEQEGANIKRMRLDAWVT
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggggaggaagaagattcagatccaacggatcaccgatgagaggaacagacaggtgacg
ttcaccaagaggaagtttggcctgatgaagaaggcgtacgagctgagcgtgctgtgcgac
tgtgagatcgccctcatcatcttcaaccactccaacaagctgttccagtacgccagcacc
gacatggacaaggtcctgctcaaatacacagagtacaacgagccccacgagagccggacc
aacgctgacatcatcgagaccttgcgaaagaaaggcttcagcggttgcgaaagtcccgag
ccagacggagaggactccatcgaccagagccccctgaacgacgacaaataccgcaagacc
accgaagacctagacatcctcttcaagcgctacggtgtcagttcttcggtcccgcccccc
acattctccgtgcccgtcaccgtccaggcctctaatcagaacgcattgcagttcagtaac
cccgggaacgccatggtgaccacctcctacgtgacgtcgtcatcgctctctgacaaccac
cacctgtcaccccagccaccggcgctccagagaagcacaggatctcccgggttgccacag
cgaccggccagcgcaggtgctatgctcggcggcgacttgaacaactcaaatggcggatgc
ccaagtccagtccctaacggatacatcagtgccagggcctccccggggctcctctcggtg
tccaacggcaacagcctggggaaagtagttccggccaagtccccacctccgcctcagagc
ccacagatggtcaacagccgcaagccagacatccgagtaatcaccactcagggtgggaag
agcctgatgcagatgacagatgatgagctggagatggtgagcgagaatgcccagcgtttg
gccggtgcacaagtgacccagatgctcaccacaccggtggtctccgtgacaacgcccagc
ctcctggcgcaggggatgcccttctccgccatgccgacagcttacaacacagaataccag
ctgacaagcgctgacatcaccgctctccacgccctggcatcaccaggcggcctgctgcaa
ggcaacacgccatggcaacagtctttatcccagcagcaacatcaacaacagcaacaactt
agtctggcgtcgcttagcaacttggtcatgtggggcatggacaaacagagtggggaattg
tctagccagatctccagtctggcagccaatctgagcgcctcgcagtccaacctcctcttg
ggtagagatgagtggttgggccggccggtgggccacatacctcagggcgccatgctgact
gtcaacaccaactccaatgtgagcatcaagtctgaacccatctcgcccggccgagaccgc
cactcaccgtgccccccgccgccctcctctggagggggcatccagacgaccgtgcccccg
ccacagtaccctggttccctactgtgcctggagccaccaaccggccgttcccccgcccac
agcctcagcagcaacggcagctcctacgagggcaatgaccgggatgaccctggggcaggc
agcggcattggcggaagtgcagtgggcaaccgtggccgttccctgcctcctgacttcagc
ccttcggtggagctcctgcgggcccagaatgaggtggagcaggagggagccaacatcaaa
cgcatgagactcgacgcgtgggtcacatag
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