KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112232688
Entry
112232688         CDS       T05605                                 
Name
(RefSeq) WD repeat-containing protein 48-like isoform X1
  KO
K15361  WD repeat-containing protein 48
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    112232688
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:otw03400]
    112232688
DNA repair and recombination proteins [BR:otw03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     112232688
SSDB
Motif
Pfam: DUF3337 WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_EML Beta-prop_EML_2 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_WDR90_POC16_2nd Beta-prop_SPT8 NBCH_WD40 Beta-prop_DCAF12 Beta-prop_SCAP ANAPC4_WD40 Beta-prop_EIPR1 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_DCAF4 WD_LRWD1 WDR54 WD40_RFWD3 Beta-prop_Vps41 RAWUL Nucleoporin_N Tfb2_C
Other DBs
NCBI-GeneID: 112232688
NCBI-ProteinID: XP_024255631
LinkDB
Position
LG16:12973908..12989158
AA seq 695 aa
MEVTSRCHHVKMATHHRQNAAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAG
RDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFC
MSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKD
SIYSLAMNQMGTVIVSGSTEKSECALLKVLRVWDPRTCAKLMKLKGHTDNVKSLLLNRDG
TQCLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNEAFTHVYSGGRDRKIYCTDLR
NPELRMLICEEKAPVLKMELDRSADPPTALWVSTTKSTVNKWSLKGIHNFRASGDYDNDC
TTPLTPLCTQPEQVVKGGASIIQCHILNDKRHILTKDTNNNVAYWDILKACKGEDLGKME
FDEEIKKRFKMVYVPNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGADPKLNL
GGLLLQALLEYWPRTHVNPMDEETEMNHVNGEHESRIQKGNGYFHVPPHTPVIFGEAGGR
TLFRLLCRDSGGETESMLLNETVPQWVIDITVDKNMPKFNKIPFYLQPHSSSGAKTLKKD
RLSASDMLQVRKVMEHVYEKIINLDNESQTGASGNNDKPSEQQKEEEDVAVLAEEKIELL
CQDQVLDPNMDLRTVKHFIWKSGGDLTLHYRQKST
NT seq 2088 nt   +upstreamnt  +downstreamnt
atggaagtgacgtcaaggtgtcatcatgtaaagatggcgactcatcacaggcagaatgct
gctgggcggagaaaagtgcaggtatcctatgtgattagggatgaggtggagaagtataac
cgcaatggggtgaacgccctgcagctcgacccggcattgaaccgcctcttcacagctggc
cgagactccatcattaggatatggagcgtcaaccagcacaagcaggacccgtacattgca
tcgatggaacaccacacggactgggtcaatgacatcgtcctctgttgcaatgggaagacg
ttgatatctgcttcctcagacaccacagtgaaagtctggaatgcgcataagggattctgc
atgtccacattgcgaacacacaaggactatgtcaaagccttagcctatgccaaggacaag
gagttggtggcctcagcggggctagacagacagatcttcctatgggacgtcaacacacta
acagcactgactgcctccaataacaccgtcaccacctcctcactgagtgggaacaaagac
tccatctacagtctggctatgaatcagatgggcaccgtcattgtgtcagggtccactgaa
aagagtgaatgtgcccttttaaaggtactgagagtttgggatcctcgaacctgtgccaaa
ctgatgaagttgaaaggccacactgacaacgtcaaatcattactgctaaacagggatggc
actcagtgtctctcgggcagctcagacgggaccatccggttgtggtcgctggggcagcag
cggtgcatcgccacctaccgggtgcatgatgagggcgtatgggccctacaggtcaacgag
gccttcacgcatgtctactctggtggccgtgaccgcaagatctactgcactgacctgagg
aacccagagctccgtatgctcatctgtgaggagaaggcccccgtcctcaagatggagctg
gaccgctcagctgacccccccacggccctctgggtctccaccaccaagtccaccgtcaac
aaatggtctctgaagggcattcacaatttccgagcatctggagattacgacaacgactgc
actactcccctgacgcctctctgcacacagcccgagcaggttgttaaaggcggagccagc
attattcagtgccacattctgaatgacaagagacatatactaaccaaagataccaacaac
aacgttgcatactgggatattttaaaggcgtgtaaaggggaagacctgggaaagatggag
ttcgacgaagagattaaaaagaggtttaaaatggtgtatgtgccaaactggttctctgtg
gatcttaagactgggatgttgaccatcacgctggatgagagcgactgctttgctgcgtgg
gtgtcggccaaggatgcaggcttctccagtcctgatggggctgatcccaaattgaacctg
ggtggactgctgctgcaggccttactggagtattggccccggacccacgtcaaccctatg
gatgaagaaaccgagatgaaccatgtgaatggggagcatgagagcaggatacagaaaggt
aatggctacttccatgttccccctcacacgccagtcatctttggagaggcagggggaagg
accctgttcaggttgttgtgtcgagactcgggtggtgaaactgagtccatgttgctcaac
gagaccgtgccacagtgggtcatcgacattaccgtggataaaaatatgcccaaattcaac
aaaatcccattctacctccagcctcattcttcctctggtgcaaaaaccttaaagaaggac
cgtctgtcggccagcgacatgctccaggtgaggaaggtgatggaacacgtatatgagaag
atcataaacctggacaacgagtctcagacaggggcctcggggaacaacgacaagcccagc
gagcagcagaaggaggaggaggacgtggccgtgctggccgaggagaagattgagctgctc
tgtcaggatcaggtattggatcccaacatggacctgcggacggtcaagcattttatctgg
aagagtggcggagacctaacccttcactatcggcagaagtccacgtga

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