Oncorhynchus tshawytscha (Chinook salmon): 112232874
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Entry
112232874 CDS
T05605
Symbol
tdrd1
Name
(RefSeq) tudor domain-containing protein 1 isoform X1
KO
K18405
tudor domain-containing protein 1/4/6/7
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112232874 (tdrd1)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Gene silencing
piRNA pathway
112232874 (tdrd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
SMN_Tudor
zf-MYND
Agenet
Motif
Other DBs
NCBI-GeneID:
112232874
NCBI-ProteinID:
XP_024255898
LinkDB
All DBs
Position
LG25:2186317..2277436
Genome browser
AA seq
1273 aa
AA seq
DB search
MWSAARGHCLVQRVGGYQKRKDTTPRVTVKDRFDSMIMNRGSFQNVMQPNMPLRRPSTSP
AGATATPRAPGPTPDRPLASSNVDAEASRKETTVLTNGSMKTASMPPFTVKLCNYCSQQG
NLRCTRCKKTCYCSVACQSEDWNAHRHMCKPSAPDTPTSDKPKEIPASPMGNGQNLSDSK
VNNGDVTCSQRVYLRDLRKNDITKGMEIQVSVVELHSPGRFFIHVQSPELVEALRAITVE
LQKTNGGSLGTDYKPDTGEVCAVKYSLDQNWYRGVVQSVAADDGNAKVLYIDFGNEEDVT
LDRIKPLAASIEPIPPCALECSVAGITPVTDSWMGVCCMAVRQLVAGKSLTLTVVDTQEN
DRTYAVDILLTPIGTVSQEGYGKQLSTFLMDQGYAVREDVNKKRAEQDVDSLVSASLENF
RRQSGGKNENMEAQPPDPLTQGLGDTFAAMVTHLQSPYDIICQKLDNASVIQELHLKLRD
HCSQTPASQNFRPAPGTVCCSLFYEDNQWYRAKVLAYSSEEKVCVGYIDFGNSEEVELSR
LCSISSELLALPMQAIPCALAGVRPTAEVWSEETVLMLRRMVCNRFLRVEILGEREGMAL
VTMIDEASDPQGNVAEMLVATGYALPSNHQDEEPTTKGQAEGAWTESAHVAKPAVGEKLQ
WTCAELPTEGQMVALVVSVMENPGEFYCYKYNQEDLQVLAELGAELKRHCEADITPFTPS
VGEPCCALFSGDGAWYRGMVQGVWAGSKARVYFVDYGNTSDVEPAHLRAITPELLKHHFL
AIRCWLAGVEPLSPQWSAESIVRFQALCVGQQLHARVLFITERGYGLQLDSSGQNVATTL
LSEQLAKAPGQSQAHAKSIPTVPKIPQQKPAIQRDTTTSVGPPKPAAANENEPPTEKQVK
KNNQSKASARQPAKVSIPFGSDGTASADKFPLDWRTVELPRNETFQPCIAAVVSPSLFYL
FNPSHVYVERLQSVMMDLAVYCTTKALPSRCKPMPGAACCAQFSGDKNWYRAVFLETTET
EASVIYADYGNSEKLPFASILPIPTEFLELPFQIARCALTGKEHFPSVWPVEVLELFSAL
LSDGVLASVQDFDGNSNLLSVTLQIERGGGHLNTMILEGLQSTQTGSAKTRRQEPGQTKT
PIIATAPVTPATAPVTLATAPATAPVTPATAPVTPATAPVTPATAPVTPATAPVTPATAP
VTPATAPVTPATAPVTDYAAPTNTEPKEPHSLICSKSVNDYASPCCCRHLVQKIDQLEEH
ILFLMEKIGGLSK
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgtggagcgcagcgcgtggacattgtctagtccagcgcgtgggtggatatcagaaacgg
aaagacacaacaccgcgtgtgacggtgaaagacaggtttgacagcatgatcatgaaccgt
ggatctttccaaaacgtgatgcaacccaacatgcctttgaggaggccgtcaaccagccca
gcaggtgccactgcaaccccaagggcccctggcccaacaccagaccggcctctagcgagt
tccaacgtggatgctgaggccagccgaaaagaaaccactgtactcacaaacggctctatg
aaaacagcctctatgcccccattcactgttaagttgtgcaactactgcagtcagcaaggt
aaccttcgctgtacgcgctgcaagaagacctgctactgctcagtggcttgccagtcagag
gactggaatgcacacaggcacatgtgcaagcccagtgccccagatactcccacaagtgat
aagccaaaggaaatcccagcttcaccgatgggaaatgggcagaacctgtcagactccaag
gtgaacaacggtgatgtgacttgctcccagcgagtgtacctgcgggacctccgtaagaat
gacatcaccaaaggaatggaaattcaggtgtctgtggtggagctgcatagccctggtagg
tttttcattcacgtccaaagcccagagctggttgaggctctgagagccattactgtggaa
ctgcagaagaccaacggtggctcgctagggacagactacaagcccgacaccggagaggtc
tgtgccgtcaaatactccttggatcagaactggtacagaggtgttgtccagtctgtagct
gcagatgatggaaatgctaaagttctctacattgactttggaaacgaagaagatgtgaca
ctggatcggatcaagcccctcgctgccagcattgaacccattccaccatgtgctttggag
tgcagcgtcgccgggataacaccggtgactgacagctggatgggggtgtgttgcatggct
gtgagacagctggtggctggaaagagcctgacactcactgtggtggacacacaggagaat
gaccgcacctacgcagtggacatcctgctgactcctatcggtactgtatcacaggaaggc
tatggaaaacagctgagcactttcctcatggaccaaggttatgctgtgagggaggacgtc
aataagaaacgcgcagaacaggacgttgactccctggtgagtgcgtccctggaaaacttc
cgccgccagtcggggggtaagaacgagaacatggaggcacagccacctgaccctctgacc
cagggactgggagacaccttcgctgccatggtgacgcacctgcagtcaccttatgacatc
atctgtcagaaactggacaacgccagtgtgatccaggagctgcatctgaaactgagagac
cactgctctcagaccccagccagccaaaacttcagacctgcccctggcacagtgtgctgc
tccctattctatgaggacaaccagtggtacagggccaaagtgctggcctactcatctgaa
gagaaggtgtgtgtaggctacattgactttggcaactcagaggaggtggagctgagtcgc
ctgtgttccatcagctctgaactcctagccctgccaatgcaggccatcccttgtgccctg
gcaggagtgcgtcccacagcagaggtctggtcagaggagactgtgctgatgctcaggcgg
atggtgtgcaaccgattcctgcgggtagagatcctgggcgagcgggagggtatggcgctg
gtgaccatgatcgacgaggccagcgacccccagggcaatgtggctgagatgctggtcgcc
acaggttatgccttgccttccaaccatcaggatgaagagcccaccacgaaggggcaggcg
gaaggagcctggacagaatcagctcatgtggccaagcctgctgtaggagagaagctacag
tggacatgtgctgagcttcctactgagggccagatggtggcactggtggtcagtgtgatg
gagaatcctggagagttctactgctacaaatataaccaagaagacctgcaggttctagcg
gagctgggggctgagctgaagcggcactgtgaggcagacatcacccctttcacccctagt
gtgggtgagccctgctgcgctctgttctctggtgatggggcatggtaccgtggtatggtg
cagggtgtgtgggctggcagtaaagcccgggtgtattttgtggactatggcaacaccagt
gatgtcgaaccagcccacctcagagcgatcacacccgagctcctcaaacaccacttcctg
gctatccgctgctggctagcaggtgttgagcctctgagcccccagtggagtgctgagtct
atagtccgcttccaggccctgtgtgtgggccagcagctccatgcacgtgtcctcttcatc
acagagcgaggctacggacttcaactggacagcagtggtcaaaacgtggccaccacactg
ctctcagaacagctggccaaagcccctggacagagccaggcccatgctaaatccattccc
actgtccctaaaatcccccagcagaagcctgccattcagagagacaccaccactagtgtg
ggaccacccaaacccgcagccgccaatgaaaatgagccgcccactgagaagcaggtcaag
aaaaacaatcagagcaaggctagtgctcggcagccggcaaaagtgtccatcccatttgga
tccgatggaactgcatctgcagacaaattccctctggactggagaacggtggagctgcct
cgcaatgagaccttccagccttgcatagcagccgttgtcagccccagtctattctacctt
ttcaaccccagccatgtgtatgtggagagactgcagagtgtgatgatggacttggctgta
tactgcaccaccaaggccttgcctagtcggtgcaaacccatgccaggagctgcatgctgt
gcccagttttcaggtgataagaattggtacagagccgtgttcctggagaccacagagact
gaggccagtgttatctatgctgactacggcaactccgagaaactccccttcgccagcatt
ctgcccatccccacagagttcctggagctccctttccagattgcccgctgtgccctcaca
ggtaaggagcatttcccgtcagtgtggcccgtagaggtcctggagcttttcagtgccctg
ctgagtgacggcgtgctggcctctgtccaggacttcgatggcaactccaacctgctgtca
gtcaccctgcaaatagagcgaggcgggggccacctcaacactatgatcctagaggggctg
cagagcacacaaactggcagcgccaagacccgcagacaggagccaggccagaccaagacc
cccatcatcgccacagctccagtcacgccggccacagctccagtcacgctggccacagct
ccggccacagctccagtcacgccggccacagctccagtcacgccagccacagctccagtc
acgccggccacagctccagtcacgccggccacagctccagtcacgccggccacagctcca
gtcacgccggccacagctccagtcacgccggccacagctccagtaactgattatgctgcc
ccgacgaatactgaacccaaggaaccacacagcctaatttgctcaaaaagtgtgaatgat
tatgcctctccatgctgctgccggcacttggtgcaaaagattgatcaactggaagagcac
attctgttcctcatggagaaaataggtggattgtcaaagtga
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