Oncorhynchus tshawytscha (Chinook salmon): 112233003
Help
Entry
112233003 CDS
T05605
Name
(RefSeq) aggrecan core protein-like
KO
K06792
aggrecan 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
otw00535
]
112233003
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112233003
04091 Lectins [BR:
otw04091
]
112233003
Proteoglycans [BR:
otw00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
112233003
Glycosaminoglycan binding proteins [BR:
otw00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
112233003
Lectins [BR:
otw04091
]
C-Type lectins
Lecticans
112233003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
V-set
UL45
I-set
Motif
Other DBs
NCBI-GeneID:
112233003
NCBI-ProteinID:
XP_042157216
UniProt:
A0A8C8J522
LinkDB
All DBs
Position
LG19:complement(5582810..5607817)
Genome browser
AA seq
1288 aa
AA seq
DB search
MITLLLLCVSLPFVTSTISFEDPSDLYSTLSVSIPMDVPLRPLMGTKVVVPCYFHDNPIN
HPGTPTVDPLSHRIKWTYITKGKAILILVASEGKVHVETEYLDRVTMANYPLVPTDITME
ITELRSKDSGTYRCEVMHGIEENHDSVDIQVQGIVFHYRAISTRYTLNFERAKAACIQNS
ATIATPAQLQAAFDDGFHQCDAGWLSDQTVRYPIHEPREGCFGDKDEFPGVRTYGVREVN
ETYDVYCFAQKMSGRVFYSMSVEKFTFYQAMDQCAKLGAKLATTGQLHLAWKAGMDVCNA
GWLADRSVRYPINIARPQCGGGLLGVRTVYLFPNQTGYPYPDSRYDAICYQEEDGEVKTT
PFPEVATITAGPMVYLGRTTAPEAEAQGEVLTQAPLDTTSMELPLPILPSVNDTYAKVTP
VVGEEIISRVTAKPNVASEFPRDNDTDMSPTGVVFHYRAGSSRYALSFVEAQLACQSVGA
VIASSQQLQAAYEAGLHHCDAGWLRDQSVRYPILSPRDKCSGNLEHLPGVRSYGLRPATE
RYDVYCYVDRLKGELFYTSDYDSFSYEEAVAYCQKLNTTLATTGQLYAAWRQGFDKCRPG
WLQDRSIRYPIHNPRPHCGGGKAGVHTIYAFPNQTGHPDQHSRYDAYCFRAEPTIIHTET
RLNVTVVVEEEMINMTTRTDQLTPVSPIVPPVSVDVSGSGLAEHSTSGSGSGTPGSGGTS
GGASGEGSGSGFQVTFEGSGHILSGQGSSSGGLQEAVEGSTTVTYTGSGNSGSGVGVGEF
SGGLPSGVLPHSGSGSGVSGDLSGSGDSVIIMVDGEMVDISKQQPTGQEFGQGGVDVSGS
SGVSGSGGFFSGDVTSTSGSGLPDISFEHSGLIDLTENPSGEQEVSGYQPFASGFPSGFP
SSYPSGFHSGSGFPSSGDGSHSGHEVIFLTEDGMMEVTTQRRPEQGRGYVEVSGDGSSQH
EGSTSASGLSLGESTVAEGVVLPPGSTMTYPEHITYLGNTGRGDDLDLVEEGQELEGHEQ
KGQEQEGLEGSMETINVTAPSAFFSSPTTATAVSMVTPVVVEEPAVVDALQGCAEGWVEF
MGSCYMHFLERDTWPDAEQRCQELNSHLVSITSQQEQEFVNSNAQDYQWIGLNDKDVQNK
FRWTDGSPLEFENWRPNQPDNYFNSGEDCVVMIWHENGQWNDVPCNYHLPFTCKSEPVVC
HSPPEVDNARPMGSRRDRYPVNSIVLYQCDAGFTRRHPPVARCLPDGRWEEPQVECIGPG
ATPSNRLHKRSIRRRSKATNSRSWRELL
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atgatcaccttgctcctactgtgtgtgtctctgcccttcgtcacctcaacaatatcattt
gaagaccctagcgatctctacagtaccttgagtgtcagcatccccatggacgtgccactg
cgccctctgatgggcaccaaggtggtggtgccctgctacttccacgacaatccaatcaac
cacccgggcacacccactgtcgaccccctgtcccaccgcatcaagtggacatacatcacc
aagggcaaggccatcctcatcctggtggcgtcggagggcaaagttcacgtggagacggag
tacctagaccgggtcaccatggccaactacccgctggtgcccaccgacatcaccatggag
atcacggagctgcgctccaaggattcaggcacctatcgctgtgaggtcatgcacggcatc
gaggaaaaccatgactcggtggacatccaggttcaaggtattgtgttccactaccgagcc
atctctacacgctacactctgaactttgagagagccaaggctgcctgtatccagaacagt
gccaccatcgccaccccagcccagctacaggctgcctttgacgatggcttccaccaatgt
gacgccggttggctatctgaccaaacagtcaggtaccccatccatgagcctcgtgagggt
tgctttggagacaaggatgagttcccgggcgtgcgaacctacggcgtgagagaggtcaac
gagacctatgacgtgtactgcttcgcacagaagatgtcaggcagagtgttctactctatg
tccgtggagaagttcaccttttaccaggcaatggaccagtgtgccaaactaggggccaag
ctggccaccacagggcagctgcacctggcctggaaggctggcatggacgtgtgcaacgcg
ggctggctggcagatagaagcgtccgctaccctatcaacattgccaggccacagtgtggt
ggaggactacttggagtgaggaccgtgtacctgttccctaaccagacaggctacccctac
ccagactcccgctacgacgctatctgctaccaagaagaagacggcgaagtcaagacgacc
ccgttcccagaggtggccaccatcacagctggccccatggtttacctggggcgtaccacc
gcccctgaggctgaggcacaaggggaggttctgacccaagcccccctggataccaccagc
atggaactgcctttacccatcctccccagtgtgaatgacacatatgccaaggtcaccccg
gtcgtgggggaagagatcatcagcagggtgacagctaaacctaatgtggcctccgagttc
cctcgtgacaatgacactgacatgtctcctacaggtgtagtgttccactaccgtgctggc
tccagtcgctatgccctgtccttcgtggaggcccagttggcctgtcagagtgtgggtgcg
gtcatcgccagctctcagcagctccaggcagcctatgaggcagggctccaccactgtgat
gcaggctggctcagggaccagagcgtcaggtaccccatcctgtctcccagagataagtgc
tcagggaatctggagcatctcccaggggtgaggtcctacggcctgagacccgctaccgag
cgatacgatgtctactgctatgtggaccgcctcaagggggagctgttctacaccagcgac
tatgacagcttctcctatgaggaggccgtggcctactgtcagaagctcaacaccacgcta
gccaccacagggcagctctatgccgcctggagacagggctttgacaagtgccgtccaggc
tggctgcaggaccggagcatccgctaccccatccacaaccccaggccccactgtggagga
ggcaaggctggggtacacaccatctacgccttccccaaccagacgggacaccctgaccag
cactccagatacgacgcatactgcttcagagctgaacctacgattattcacactgaaacc
agactcaacgttactgtagttgtcgaggaggaaatgatcaacatgacaaccagaacggac
caattgactcctgtgagccccatcgtaccacctgtatctgtggatgtgtccggttcaggc
ttagctgagcattctaccagtggtagtggcagtggaacccctggtagcggaggtacatct
ggtggggccagtggcgagggctccgggtctggcttccaagtcacattcgagggcagtggg
cacatcttgtcaggacagggctctagctctggaggtctacaggaggcagtagaggggagc
accactgtcacttacaccgggtctgggaatagtggctccggggtgggggtgggagagttc
agcggtgggctaccgtctggtgtccttccccactccggtagtggcagtggggtatctggg
gacctgagcggtagcggggactctgtcatcatcatggtggacggagagatggtggacatc
tccaagcagcagcccaccggacaggagtttggacaaggaggtgtggatgtcagtggctcc
agtggagtgtccggatcgggtggcttcttcagcggggatgtgaccagcacttctggctct
ggacttcccgacatatcttttgagcattcaggtctcattgacctgaccgagaatccctcg
ggagagcaggaggtctctggctaccagcccttcgcctctggttttccaagcggtttcccc
tccagttatccttccggttttcacagcggctctggattcccatccagtggtgacggatcc
cactcaggccatgaggtcatcttcctgacagaagacgggatgatggaggtgacaacacag
cggcgtccggagcagggtcggggttacgtagaggtcagtggtgacggcagtagccagcat
gaagggagcacctcagccagtgggctctccctgggggagtcaacagtcgcagaaggcgtg
gtgctgccccctgggtctaccatgacttacccagagcatatcacctatctgggaaacaca
ggaagaggggatgacctggacctggtggaggaaggccaggagctggagggccatgagcag
aaagggcaggagcaagaaggactggaagggtccatggagacaatcaatgtcacggcacca
tctgcattcttctctagcccaacaacagcaaccgccgtctcaatggtgacccctgttgtg
gtggaggagcctgctgtagttgacgcactgcagggctgtgccgaaggctgggtggagttc
atggggagctgctacatgcactttctagagagagacacctggcccgacgccgagcagcgc
tgccaagagctcaactcccacctggtcagcatcacctcccaacaggagcaggagtttgtc
aactctaacgctcaggactatcagtggattggactcaatgacaaggacgtgcagaataag
ttccgctggacagatgggagtccattggaatttgagaactggaggcccaaccagccggat
aactactttaactctggagaggactgtgtagtgatgatctggcatgagaacggccagtgg
aacgatgttccctgcaactaccacctgcccttcacctgcaagagtgaacctgtcgtgtgc
cactcccctcccgaggtggacaatgccaggccgatgggcagcagaagagaccgctacccc
gtcaactctatcgtcctctaccagtgtgacgcaggcttcacacggcgccacccgcctgtt
gcacgctgtcttcccgacgggcggtgggaggagccacaagtggagtgtataggacctggt
gccacccccagcaaccgactacataagaggtccatcaggagacggtctaaagcaaccaac
agtcggtcatggcgggagcttctctaa
DBGET
integrated database retrieval system
