Oncorhynchus tshawytscha (Chinook salmon): 112233019
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Entry
112233019 CDS
T05605
Name
(RefSeq) protein SOGA1 isoform X1
KO
K27704
microtubule cross-linking factor
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112233019
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
112233019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOGA
SOGA1-2-like_CC
Rsa3
Motif
Other DBs
NCBI-GeneID:
112233019
NCBI-ProteinID:
XP_042155250
LinkDB
All DBs
Position
LG16:51172011..51232831
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AA seq
1854 aa
AA seq
DB search
MTKTKADVHSPTHFVSPKERRHRHKMESGTENANGGQAQPQQQHQFEQQPVVQSIQVNEK
KKINRAPSPARPKDVPGWSLTKIRGGIGTPTLSVKPGSIHLGSRVSRRSPGSGKETKSEK
GKLPGKSTLSVASAQKSGSKSMKGGRKKVADASNASDDLSKDSGCAAGKLSPTDSSSEIS
DCASEENKLSTEALSSDTESSSRGGGAEGEKPSRDCGDGPPDRGTRGDHHAKTPADKDRL
SFGVETGEGSISPGDERSLTSFDSRVPASTSLAFSDLTEEFMDGMHEEFVREIEELRSEN
DYLKDEMEELRSEMLEMRDMYMEEDVYQLQELRQQFEQANKTCRILQYRLRKAERRSLRV
AQTGQVDGELIRTLEQDVKVAKDVSIRLHTELDSVEKKRGRLEQENEEMRFRLQELEVAK
QVLQAEMEKQREVRRQNSLKKRGARPNNKPEKKLSPQQEDSSDLKCQLHFAKEESALMCK
KLTKMAKDSEEMREELAKYRSMYGDVDASLTVEEVNDSPHTREAEVRVHLKLVEEEANLL
SRRIVELEVENRGLRAEMDDMKGQELPPGLGVGGMGGHGGGGLENVMELQRHLQFVEEEA
ELLRRSLLEMEEQNKLLMNEINRYKSELPLASDPDQDDSSSISLLEDSHGGGALISTEAP
QEELLQAARLQIGDLSGKVKKLQYENRVLLSNLQRCDLASYHSSSRPALETDAEAGDSAE
CLPSQAHREGPIGGENEPLEEREKKTSTGFPVPLGLKDRESLLAMRDQARLISTAIQLLT
ASDSNCPSISLYRKISSGEAAEPCVPEKSQQAQPSELQDLPLVEALTGRLRALHTQLQAF
VEWVESLGTTPSGRAQVEGASPLPLLSEAGDSVVGAPSASHPCPPDDQAGEIPAEQKQPN
FRDQSERDVKGQKEEGDSRTDRNQTQETQETDTALQISELQALLSDARETAHGTQEELTL
ERQAHRDHTHSTSQTVSQLQEEHQKALTRRDFQLQSLSLQTRLQQKFWSQERNLMVQESH
QLKQTLLLLSLKLRCFLKQWRLGRKLDTEAKDVLEVNSLKDLYLLLEEESLAAHQGDNKM
AAAEEQPLSTSISKELCLLEKSYKQTRGVSSTLADLKGALQDLSGELREERQGSQELTQQ
FARAKASWEVERTELKSLITQLESKLGQAVLAGGEKDLQGPPDLKMALKREREEYPHLLA
DSYAAVMDLTKQLQTGERNWSREKLELLEHFSQERGQWEQRLQNKMSLHEKNTSERETAT
DAITNGSNLPRTKSIPSMPELEGLLEACPFLPGQEVNGTANEEGEKDQPNTQAPPLLAHT
DLGDLTRKNWKYLTNEVAMMEQGNAPFKTWDCPSSPSSFLGLGSIQRSYTAPDKTGIRIY
YSPPTMRRMESRLAKEKQDKPQAQQGHLSRASTPSDAGAPEGQPPSSSFASSSSSYDQWL
SSLSEQHRELLENSSGGAGVAPFHGLEISANLSDDMKEMTNCVRQAIRSSSLERKCSKDA
GSQTVGVSSRSTQTAQFVSVGLQTDGLGSRGVGGLHTKSSWSPRPSSSLASARSRHISSS
LDKVHSRIDRPCCSPKYGSPKLQRRISASSSKLEGVGSSSASSRDRSLWNLHQRSSTSSG
SAWARSTTTRDSPVLSGLNDGLSSLFSVVEHSGSVESLWKSEPGVSPARQAAGKPSGPAP
DTGAQKYGPLQEFFRNVCGRTGTPMPGGGERGQREVGATDEPKPECLSGASLVGNDSVTK
IVNKRFMRQMPREELGANARDPTARDPTPRDPTARDPTARDPSTRDPTTRDPTVRDPTMS
SNIEDAVCDCTSQALTSCFVRPSRSATRHSPGLCIHLSQESPTATEERLDPSNE
NT seq
5565 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagacaaaggctgatgttcattcgccaactcactttgtctcgcccaaggaaagg
agacacaggcacaaaatggaaagcgggacggagaacgccaacggcgggcaggcgcagccc
caacaacagcaccagttcgagcaacagcccgtagtgcagtccatccaagtgaacgagaag
aaaaagatcaaccgggctccgtcacccgctagacccaaggatgtgcctggatggtccctc
accaagatccggggaggcatcggtacaccaacactgagcgttaaaccaggatccatacat
ttaggcagccgggtgtccaggcgtagtccaggtagcggaaaagagaccaaatcagagaaa
ggaaaactgcccgggaaatccacactatcggttgccagtgcccagaagagcggcagtaaa
tcgatgaaaggtggtcggaagaaggtggcggatgcaagcaacgcctcggacgacctgagc
aaagactctggttgcgccgcgggcaagctgtcgccaacggatagcagttctgagatctcc
gattgcgcctcggaggagaataaactctccaccgaagctctgagtagtgacaccgaatcc
agcagccgaggcgggggggctgagggcgagaaaccgagcagggactgcggagatggacca
ccggataggggtactcgtggtgaccatcatgccaagacccccgcagataaggaccgactc
tcctttggagtggagaccggggaggggagcatttctccgggggatgaacgatctctcacc
tcgttcgacagccgggtgcctgccagcacttccctggctttctccgacctgacagaagag
ttcatggatggcatgcatgaagaatttgtcagggaaatcgaggaactgagatcagaaaac
gattacctaaaagacgagatggaggaactgcgctctgagatgttggagatgagggacatg
tacatggaggaggatgtgtaccagctgcaggagctgaggcagcagtttgagcaggccaac
aagacctgccgcatcctgcagtaccgcctccgcaaggccgagagacgcagcctccgcgtg
gcccagacgggacaggtggacggggagctcatccggaccctggagcaggacgtcaaggtg
gctaaagacgtgtccatccggctgcacaccgagttggactctgtggagaagaagaggggt
cgtctggagcaggagaacgaggagatgaggttcaggctccaggagcttgaggtggccaag
caggtcctgcaggctgagatggagaagcaacgagaggtaagacgtcagaactctctgaag
aagcgaggggctcggccaaacaacaagccagagaagaagctgtctccccagcaggaggac
agttctgacctcaagtgccagctccactttgccaaggaggagtcagcgctcatgtgcaag
aagctgaccaagatggccaaggacagcgaggaaatgcgggaggagctggccaagtaccgt
tcgatgtacggcgatgtagacgcctcgctcaccgtggaggaggtcaacgactcgccccac
acgcgcgaggccgaggtcagagttcacctgaagctggtggaggaggaggccaacctgctg
agccggcgcattgtggaactggaggtggagaaccgcggcctgcgggccgagatggacgat
atgaagggccaggagctgccaccaggcctgggggtcggcggcatgggaggacatggagga
ggaggtctggagaacgtgatggagctccagaggcacctgcagtttgtcgaggaggaggcg
gagctgctgcggcgctcgctgttagagatggaggagcagaacaagctgctgatgaacgag
atcaaccgctacaagtcggagctgccgctggcgtcggacccagaccaggacgactcctcg
tccatctctctcctggaggacagtcatggtgggggggctctgatcagcacagaggccccc
caggaggagctgctgcaggccgccaggctccagatcggggatctgagtggcaaggtgaag
aagctccagtatgagaaccgtgtgttgctgtccaacctgcagcgctgcgacctggcctct
taccacagctcttccaggcccgccctggagaccgacgcagaggcaggggactcagctgag
tgcctccccagccaggctcaccgcgagggccccatcggaggggagaacgagcccctggag
gagagggagaagaagacgtccactgggtttcctgtccccctggggctgaaggaccgtgaa
tccctgctagccatgagggaccaagcccgcctaatctctacagccatccagctgctgact
gcctccgactccaactgcccttccatctccctctaccgcaagatctcctccggggaggct
gcagagccatgtgtcccagagaagagccagcaggcccagccctcggagctccaggatctt
cccctggtggaggctctgacgggtaggctgcgagcactgcacacccagctccaggctttt
gtggagtgggttgagagcctaggcaccaccccctcagggagggcacaggtggagggggca
tcccccctgcctctactgtccgaggctggggactctgtggtgggtgcaccctctgcctct
cacccctgccctccagatgaccaggcgggtgagatccccgcagagcagaagcagcccaac
tttagggaccaatcagagcgcgatgtgaaaggtcagaaggaggagggtgacagccgcact
gaccgcaaccagacccaggaaacacaggagacggacacagctctgcagatcagtgagctg
caggcccttctgtcagatgcgagggagacggctcacgggacgcaggaggaactgactctg
gagagacaggcccaccgagaccacacccacagcacttctcagacagtctcacagctgcag
gaggagcaccagaaggccctgacgcggagggacttccagctgcagagtctgagtctgcag
acgcggctgcaacagaagttctggagccaagagaggaacctgatggtgcaggagtcccat
caactcaagcagaccctgctgctgctgagcctcaagctgcgctgcttcctcaaacagtgg
cgtctgggacgcaagctggacacggaggccaaggatgtcctggaggtgaacagtctgaag
gacctgtacctgctgttggaggaggagagtctggccgcccaccagggagacaacaagatg
gccgccgcagaggagcagcccctcagcaccagcatctccaaggagctctgcctgctggag
aagagctacaaacagacgaggggcgtgagcagcactctggcggacctgaagggagcgctc
caggatctgagcggagagctgcgagaggagcgccagggctcacaggaactcacccagcag
tttgcccgcgccaaggcctcctgggaagtggagaggacagagctcaagagcctcatcacc
cagctggagagcaagttgggccaagctgtgctggccgggggagagaaggacctccaagga
cctcccgacctgaagatggccctgaagagggagcgtgaggagtacccgcacctcctggcc
gactcgtacgccgccgtcatggacctgaccaagcagcttcagacgggcgagaggaactgg
agccgcgagaagctggagcttctggagcacttcagtcaggagaggggccagtgggagcag
aggctacagaacaagatgtctctgcacgaaaaaaacacctccgaaagggaaactgcaaca
gacgctattacaaatggaagcaatttaccaaggaccaaatccatcccgtccatgccagag
ttagagggtctgctggaggcctgccctttccttccgggtcaggaggtcaacgggacagca
aatgaggagggagagaaggaccagcccaacacccaggcccctccccttctagcccacaca
gacctgggtgacctcaccaggaagaactggaagtacctgaccaatgaggtggctatgatg
gagcagggtaatgcccccttcaagacgtgggactgccccagctcccccagtagtttcctg
ggcctggggagcatccagaggagctacacggcccccgacaagaccggtatccgcatctac
tacagcccccctaccatgcgccgtatggagagccggctagccaaggagaagcaggacaaa
cctcaagcgcagcaaggccacctgtcccgggcttcaactccgtcagacgctggggccccg
gagggccagcctccctcttcctcttttgcctcctcctcttcgtcctacgaccagtggctg
agctctctgtccgagcagcacagggaacttctggagaacagcagcggtggcgcgggggtg
gcgcccttccatggcctggagatctctgccaacctctcggacgacatgaaggagatgacc
aactgcgtgcgccaggccatccgctccagctctctggagaggaagtgcagcaaggacgcg
ggcagccagacggtgggggtgtctagccgctccacccagacggcccagtttgtgagtgtg
ggactgcagacggacgggctcgggtctcggggggtggggggcctccacaccaagtcctcc
tggtccccccggccctcgtcctcactggcctcggcccgctcacgccacatctcctcatcc
ctggataaggtgcacagccgcatcgacaggccctgctgctcgcccaagtatggctccccc
aagcttcagcgccgcatctccgcctcctcctccaagttggaaggagtggggtcgtcctcg
gcttcctcccgggatcgcagcctgtggaacctgcaccagcgctcctcgacctccagcggc
tcggcctgggcccgctccaccaccaccagggacagccccgtgctcagtggcctcaacgac
ggcctgtccagcctgttcagtgtggtggagcactcaggcagtgtggagtccctatggaag
agtgagccgggggtcagcccagcccgccaggcagcagggaagccctctggtcctgccccc
gacaccggagcccagaaatacggtcccttacaggaattcttcaggaacgtatgcggtcgg
accggaacacccatgcctgggggaggggagagagggcagagggaggtgggggccacggat
gagcctaagccagagtgcctctccggggcctcgctggtggggaacgacagtgtcaccaag
atcgtcaacaagaggttcatgagacagatgcccagggaggagcttggggccaatgccagg
gaccccaccgccagggaccccacccccagggaccccaccgccagggaccccaccgccagg
gacccctccaccagggaccccaccaccagggaccccaccgtcagggacccgaccatgagc
tctaacattgaggatgcagtgtgtgattgcacctcccaggctctgacttcctgcttcgtc
cggccctcccgctcggccacacgccattcaccgggcctctgcatccacctctcccaggag
tctccaacggcaacagaggagagattggatccaagcaatgagtga
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