Oncorhynchus tshawytscha (Chinook salmon): 112233347
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Entry
112233347 CDS
T05605
Name
(RefSeq) homeobox protein SIX4-like
KO
K15615
homeobox protein SIX4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112233347
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
112233347
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SIX1_SD
Homeodomain
Homeobox_KN
HTH_TSHZ3
Motif
Other DBs
NCBI-GeneID:
112233347
NCBI-ProteinID:
XP_024256688
UniProt:
A0A8C8GRT2
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Position
LG11:30415019..30423001
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AA seq
681 aa
AA seq
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MSSSSGEVTISNDIQKENVKTDRRECIKLLALDTAELSMERATSNTDAVHSELLVSATSS
LAFSPEQVACVCEALQQGGNVDRLARFLWSLPQSDLLRGNESILKAQALVAFHQARYQEL
YSILENHSFSPSNHSSLQDLWYKARYTEAEKARGRPLGAVDKYRLRRKYPLPRTIWDGEE
TVYCFKERSRNALKDLYKQNRYPSPAEKRNLAKITGLSLTQVSNWFKNRRQRDRNPSEAQ
SKSESDGNHSTEDESSKGQEELSPLPLSNSSDGAMTHGALPLQTGSLDSGLVIKQIGDIK
MPPGSSSGVLFNGNLVTSNPSTVFHNGGSSYLQAPSNILFNGLNLGVQPQAFNPQRLSGG
VLMGGSGVDMQMQAGQEKGLGSSGVDYASYSGCVNGAEVKLEGVHGMAAQNAGSSVLTFS
SSSGTLQLGGYSQVHVHSGISDGNRASLLNSNVGLPPLQLPSGSSTSALSQGTIQVNNVA
VSSSSEDSYHHQHHQDKLAMAPMHPSTVLYSMGNTGQTSIKKEPLEGGGGGGVYSYHHGL
HLDTSGQLSYSSAPLNSEEVPSSQSPTPSSDVTMVSSSSPEPEVYTTLTVSTPLMAQTDP
NGHHLQPEYLRGHNPQPVPSSHLLGPGMNNNYMSVSESKVDASGDGVNEMVRVMCGEMEP
GEEKELAKLQTVQMDEDMADL
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttcttcaggagaagtcacaatttcaaatgacattcagaaggaaaatgtgaag
acggacaggcgagagtgtatcaagcttctggcgctcgataccgcggagttgtctatggag
cgcgcaacttcgaacactgatgcggtccacagtgaacttctggtgagcgcgacttcttcc
ctggcattctccccggagcaagtggcgtgcgtctgcgaggctctgcagcagggaggcaat
gtggaccggctggccaggtttttatggtccttgccacagagtgacctgctacgcggcaac
gaaagcattctgaaagctcaagctcttgtcgcttttcatcaggctcggtaccaggagctc
tacagtattttggagaaccacagcttcagtccgtccaaccactcctcgctgcaagaccta
tggtacaaggcacggtataccgaggcagagaaagcgcgtgggagacccctgggcgccgtg
gataaatatcgcctgcggagaaagtacccactcccacggactatctgggacggggaagag
acagtatactgcttcaaagagaggtcccgcaacgcgctgaaggatctctacaaacagaat
agatatccctctccagccgagaaaagaaacctcgctaaaatcacgggactctctttgacg
caggtcagcaactggttcaaaaacaggagacagagggacagaaacccatccgaagctcaa
tcaaaaagtgaatctgatggcaaccacagcacagaggatgagtctagtaaaggacaggaa
gagctttctccactccccctctccaattcatctgatggggcgatgacccatggggccctc
cccctgcagacagggtctctggacagtgggttggtcatcaaacagattggggacatcaag
atgccccctggatccagcagtggggttctctttaacgggaacctagtgaccagtaacccc
tccactgtcttccataatggtggctcgtcttacctccaggcccccagcaacatcctgttc
aacgggctcaacctgggtgtccagccccaggccttcaacccccagcggctctctgggggg
gtcttaatggggggctctggtgtggacatgcagatgcaggcaggccaagagaaggggctg
ggcagctccggtgtggactacgcctcctactccggctgtgtgaacggggcagaggtgaaa
ctggagggggttcacggcatggcagctcaaaatgccggctcgtccgtcctcacgttcagt
tcgtcctcagggacgctccagctgggcggttacagtcaggtccatgtgcacagcggcata
tctgacggcaacagggcatctctgctcaacagcaatgtaggtcttcctcctctgcagctc
ccctctggctcctccacctcagcactctcacaaggtacaatccaagtgaacaatgtagca
gtcagttcttccagtgaggactcttaccaccaccagcaccatcaggacaagctggccatg
gcccccatgcatcccagcacagtgctgtacagcatgggcaacactggacagacctccatc
aagaaggagcccctggagggaggcgggggcggtggggtatactcctaccatcatggcctt
cacctggacaccagtgggcagctcagttactcctcagcccccctaaactcagaggaggtc
ccctctagccagagccccaccccctcctctgatgtaaccatggtcagctcctccagtcca
gagcctgaggtctacaccaccctcaccgtcagcacccctctgatggcccaaacagacccg
aacggacaccacctccagcctgagtacctcaggggccacaacccacaacctgtcccctcc
tcacacctcctgggccctggcatgaacaacaactacatgtctgtgtcagagagtaaggtg
gacgcaagtggcgatggggtgaatgagatggtgcgggtcatgtgtggggagatggagccg
ggggaggagaaggagctggccaaattacagacagtgcagatggacgaggatatggctgac
ctttaa
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