Oncorhynchus tshawytscha (Chinook salmon): 112233464
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Entry
112233464 CDS
T05605
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1 isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04020
Calcium signaling pathway
otw04080
Neuroactive ligand-receptor interaction
otw04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
112233464
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
112233464
04082 Neuroactive ligand signaling
112233464
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112233464
Ion channels [BR:
otw04040
]
Ligand-gated channels
Glutamate (ionotropic)
112233464
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
Motif
Other DBs
NCBI-GeneID:
112233464
NCBI-ProteinID:
XP_024256877
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All DBs
Position
LG33:complement(25953670..25983641)
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AA seq
972 aa
AA seq
DB search
MRLFLLAVFLSCSCARAGCEPKIVNIGAVLSQKRYEQVFKDAVTQANQIYGRDKFKLTAI
SVTHKPNAIQMALSVCEDLISNQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAHVWFDMMREFRWNHIILIVSDDHEGRAAQKRLETL
LEERETKNKKRNYENLDQLSYDNKRGPKAEKVLQFSQETNLTALLLEAKELEARVIILSA
SEEDAAAVYKAARFLNMTGSGYVWLVGEREMSGKALSEAPDGLIGLQLINGKNESAHIND
AVAVVAQSIQELFEKENITEPPRGCVGNTNIWKTGPLFKRVLMSSKYPEGLTGRVEFNDD
GDRKYAHYSILNYQKSRLIQVGIYNGTQVVMNNQRKIIWPGGETEKPRGFQMSTRLKIVT
IHQEPFVYVKPTEQDGTCKEEKTLNGVADIKKVICTGPNETIPGNTTGRPIVPQCCYGFC
IDLLIKLAGTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTI
NNERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYL
LDRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGF
AMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVEL
STMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFG
IGMRKDSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFML
VAGGIAAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQDSKEASGSQAVGASMT
PSLPSSSLETQDDRKSGRAEPPDPKKKASFRSISTSLASSIKRRRSSKDTQYPPTDITGQ
LNLSDPSVSTVV
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttgtttctgctggcggtgttcctctcgtgctcctgtgcgcgggctggctgcgag
ccgaagatagtgaacatcggagccgtcctgagccagaagaggtacgagcaagtctttaag
gatgcagtgacccaggcgaaccagatatacgggagagataaattcaagttgaccgccatc
tccgtaacgcacaaacccaacgctatccagatggctctctccgtctgcgaggacctcatc
tccaaccaggtgtatgccatcctggtgagtcatcctccccagtccaacgaccacctcacc
cccacgcctgtgtcctacaccgcaggcttctaccgcatccctgttgtgggcctcaccaca
cgcatgtccatctactccgacaagagtatccacttgtcttttctgcggactgtccccccg
tactcccaccaggctcacgtgtggttcgacatgatgcgagagtttcgatggaaccacatc
atcctgatcgtcagcgatgaccacgaggggcgggccgcgcagaaaagactggagacccta
ctggaggagagggaaacaaagaataaaaaaaggaactatgaaaacctcgaccaactgtcc
tatgacaacaagcgaggaccaaaggcagagaaagtcctccagttcagccaggagactaac
ttaactgcgctgcttctagaggccaaagagctggaggctcgcgtcatcatcctctccgcc
agtgaagaggacgctgctgcagtttacaaggctgcccgtttcctcaacatgacgggctcg
ggttacgtgtggctggtgggagagcgggagatgtcgggtaaagccctgagtgaggcacca
gatggtctcattggcctccagctcatcaacggcaagaacgagtcggcccacatcaatgac
gcagtggccgtggtggcccagtccatccaggagctgtttgagaaggagaacattactgag
ccgcccagaggctgcgtgggaaacaccaacatctggaagaccgggcccctcttcaaaagg
gttctgatgtcatcaaagtacccagagggcctcactggacgagtggagttcaatgacgat
ggcgacaggaagtacgctcactacagcattctcaactaccagaagagtcgactcattcaa
gttgggatttacaatggaacacaggtggtgatgaataatcagaggaagatcatctggccg
ggaggagagacagagaaaccgcggggctttcagatgtccacgagactaaagatagtgacc
atacaccaggagccctttgtgtatgtgaaacccactgagcaggatggaacctgcaaggag
gaaaaaaccttaaatggagtggcagatattaaaaaggtgatctgcactggaccaaatgag
accatcccaggtaacacaacaggacgtccaattgtacctcaatgttgttatggattctgt
attgacctacttatcaagttggctggaaccatgaactttacctatgaagtacacctggtg
gctgatgggaaatttggaacacaggagcgggtgaacaacagcaacaagaaagagtggaat
ggcatgatgggagagctcctggggggtctggcagatatgatcgttgccccgctgacgata
aacaacgaacgagcccagtacatcgaattctccaaaccgtttaagtaccaaggcctaacc
atccttgttaaaaaggaaatccctcgcagtacactggactcgttcatgcagccgtttcag
agcacactgtggctgctggtgggtctttcggtgcatgtggtggcggtgatgctttaccta
ctagaccggttcagcccgtttgggaggtttaaagtaaacagtgaagaagaagaagaagac
gccctcaccttgtcgtcagccatgtggttctcctggggagtgttgcttaactccggtatt
ggagaaggcgcgccgcgcagcttctcagcgagaatcttgggcatggtgtgggccggcttt
gccatgatcatagtggcatcgtatactgccaacctggctgccttcctggtgctggaccgg
cctgaggagcgcatcaccggcatcaacgacccgaggctgaggaacccatcagacaagttc
atctatgccacagtgaagcagagctctgtggacatctacttccggcggcaggtggagctt
agcaccatgtaccgccacatggagaagcacaactacgagagtgccgctgaggctatccag
gccgtgcgcgacaacaagctgcatgctttcatctgggactctgcggtgctggagtttgaa
gcctcgcagaagtgcgacctggtgaccacgggagagctgtttttccgttcgggctttggc
ataggcatgcgcaaggacagcccctggaaacagaatgtgtccctggccattctcagttcc
catgagaatggcttcatggaagatctagataaaacctgggtgagataccaggagtgtgac
tcacggagcaatgccccagccacactcacctttgagaacatggcaggagtgttcatgctg
gtggctggaggcatagcagcagggatcttcctcatctttattgagatcgcctacaagcga
cacaaagacgcccgaaggaagcagatgcagctggcctttgcggccgtcaacgtctggagg
aagaacctgcaggacagtaaggaggcctctggaagccaagctgtgggcgcatcgatgacc
ccatcgttaccctcttcctctctagagactcaggatgataggaaaagtggtagagcagag
ccccccgaccccaaaaagaaagcctcttttaggtccatcagtacctccctggcctccagc
atcaagagacgtaggtcatccaaagacacgcagtacccacccaccgacatcacgggccag
ctcaacctgtccgacccgtctgtcagcacggtggtgtga
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