Oncorhynchus tshawytscha (Chinook salmon): 112233717
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Entry
112233717 CDS
T05605
Symbol
sorcs3
Name
(RefSeq) VPS10 domain-containing receptor SorCS3
KO
K27083
VPS10 domain-containing receptor SorCS3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112233717 (sorcs3)
Membrane trafficking [BR:
otw04131
]
Endocytosis
Others
Others
112233717 (sorcs3)
Endosome - Lysosome transport
112233717 (sorcs3)
Endosome - Golgi transport
112233717 (sorcs3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
LPP
Motif
Other DBs
NCBI-GeneID:
112233717
NCBI-ProteinID:
XP_024257300
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All DBs
Position
LG32:complement(13848659..14049302)
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AA seq
1252 aa
AA seq
DB search
MDTWLGFCPGLHLTLCTWFLISAHTPLNAKAEITCASCQSPVQLHLKELQMDIGTHAADG
TRQAAKALEQVPLERQLLGVTDQNTGVPSDTQQAGVLVNEPRFNDDGITQKVALEDLTGS
SENEERYRGEYNIGVNDLGKVKDGAEDVALQRAKRSGPETPEFRESLMTGGPGLEGETSD
ERRSPGPLLDGHRLGRSEFKWNRDEGRGTSRGDDPKLSSTTFALTGDSAHNHAVVYWSGQ
NSSVILILTKLYDFHLGSVTESTLWRSTDYGSTYERMNDKVGSKTVLSYLYVCPSNKRKI
MVLTDPEFESSVLISSDEGASYQKYRLSFYILSLLFHPTQEDWALAYSHDQKLYASLDFG
RKWQLVHEHVNRFYWSVTGLDKESDLVHMEAHTPNGRIQYVTCRALTCSEHNRNYPFPEY
IDISSLVVQDDYMFIQVTTAGQASYYVSYQRDPFIKIKLPKYSLPKDLHIVSTDEHQVFA
AVQEWNQNDTYNLYLSDTQGILFTLAMENVKTTRGLGGNQMLDLYEVAGIKGMLIANRRL
DNQVKSYITYNKGRDWRLLQAPATDMAGNDIHCILPFCSLHLQLQTSENPYLSGSISTKA
SAPGIIVATGNIGSELSYNNVGMFISSDAGNNWRHIFEEEHNVWFLDKGGALVAVKQPTV
PTRHLQISFDEGRQWTRHSFSLVPLFVDGMLVEAGTENQIMTFFGHFSHRSEWQLIKIDY
KSIFNRKCTEGDYQTWHLHNKGEPCVMGQKQIYMKRRPGNYCMLGKDYAKVLSAESCICR
AHDFECDYGYERRREGNCLPAFWFNPAVVSRSCSQGQKYLNSTGYRKVVSNNCVKGVKDM
YTPRKQMCPNRAPKGLSLSTREGKLTADLLTNVTFLVHLDEGDSMRTNIQLDFGDGTAVS
YSNLSWIEEGIRHVYKMAGIFRVSALAENTLGFDTTTLYLHVTCPVEHVQLLAPFVAIKN
KAVNLTAVVWPVHSRTVTYFWWLGNNTEPVISLDGSISYTFTSEGMNTVTVQVSSANTIL
QDTKTIAVQEFFKSLLLSFSPNLDEYNPDVPEWRQDVGRVIKKALLQVSDFPEDQLLVAV
FPGVPTAAELFLLPHKNQSEGRKKSEEELEQISEILASALNQNLVEFELKPGARVIVYIT
QLTLAPLVDSMPRHSSSAMLMLLSVVFLGLAVFLIYKFKRKIPWINIYAEVNQEKEQEMI
GSVNQSDSTPKITLSEFTTAKEVMEKEMDTRVKRRIGHACESTREIPNCTSV
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atggatacttggcttggcttctgcccaggcttgcacttaactctgtgtacctggtttctg
atctccgctcataccccgctaaatgccaaggcggagataacttgcgcatcgtgccagtcg
ccggtccagctacacctgaaggaattacagatggatatcggtacgcacgcggctgatggt
acgaggcaggcggccaaagctctggaacaggtcccgctggagcgccagctactcggagtt
actgaccaaaatactggagtaccaagcgacacccaacaggcaggtgttcttgtgaatgag
ccgagattcaatgacgatggaattacccaaaaagtcgctctggaagatttaactgggtct
agtgaaaacgaagaaaggtaccgtggggaatataatattggggtgaatgatttgggtaaa
gtcaaggatggtgctgaggatgttgcgttacagagagcgaagcgaagcggtcccgaaact
cccgagtttagggagagccttatgaccggtggccccggtttagaaggagagacatcggat
gagagaaggagtcctggtccgttactggacggacacagactgggccgatctgaattcaag
tggaacagggatgagggtcgagggacttccagaggagatgatcccaaactaagcagcact
actttcgccttgaccggagactcagcgcataaccacgcagtggtttactggtcggggcaa
aacagcagcgtgatcctgattctgaccaaactctacgactttcacctggggagtgttaca
gagagcaccttgtggagatcaacagactatggatccacctatgagaggatgaatgacaaa
gtgggatctaagactgtgctgagttacctgtatgtctgtccatccaacaagagaaagata
atggtgctgacagaccctgagtttgagagcagtgtgctcatcagctcggatgaaggagcg
agctatcagaaataccgcctcagcttctacattctaagccttctgttccatccaacacag
gaggactgggctctagcctacagccacgaccagaagttgtacgcatcgctggactttggg
agaaaatggcagctggttcatgagcatgtgaacaggttctactggtctgtaacgggtcta
gacaaggaatcagatctggttcacatggaggcacacacccccaatggacgtatacagtat
gtaacatgccgggctctaacgtgctcagagcacaacagaaactatcccttccctgaatac
atcgacatcagctcactggttgtccaagatgactatatgtttattcaggttactacagca
ggacaggccagctactatgtgtcctaccagagggatccattcatcaaaatcaaactgccc
aaatattctctgcctaaggacctccacatcgtcagcacagacgagcaccaggtcttcgcg
gcagtgcaggagtggaaccagaacgacacgtacaacctgtacctctccgacacccagggc
atcctcttcaccctggccatggagaacgtcaagaccacccgcggcctggggggaaaccag
atgctggacctgtatgaggtagcaggtatcaaaggcatgctgatcgcaaacaggaggcta
gacaaccaggtgaagtcctacatcacctacaacaagggccgtgattggaggttactgcag
gccccggcgacagacatggctggcaacgacatccactgtatactgcccttctgttcgctc
catctccaactgcagacgtctgaaaatccctacctgtcaggcagcatatcaaccaaggcc
tcagcaccgggaatcatagtggccacagggaatattgggtctgagctgtcgtataataat
gttggaatgttcatctcatctgatgctggtaacaactggagacatatattcgaggaggaa
cacaatgtctggtttctggataaaggaggggcccttgtcgctgtgaaacaaccaaccgtc
cccactaggcatttacaaatcagttttgatgaagggcgtcagtggaccagacacagcttc
tccttggtgcctctgttcgtggacgggatgctggtggaggcagggacagagaaccagatc
atgacgttttttggacatttcagccataggtctgagtggcagcttatcaagatagactac
aagtccatcttcaacaggaaatgtacagaaggagactatcagacgtggcaccttcacaac
aagggcgagccgtgtgtgatgggccagaaacagatctatatgaaacgcagaccaggaaac
tattgcatgctgggaaaagactacgccaaagtcctctctgctgaatcgtgtatctgtcgg
gcccacgactttgaatgtgattatggttatgaacggcgtagagaagggaactgtctacca
gcgttctggttcaacccagctgttgtctcaaggagctgcagccaaggacagaagtacctc
aacagcacagggtaccgaaaagtggtgtccaacaactgcgtcaagggagtcaaggacatg
tacacacccaggaagcagatgtgtcccaacagggctccaaaaggcctttctctctccacc
agagagggcaagcttactgccgacctgctcaccaacgtcaccttcctagtgcatctggat
gagggtgactcaatgagaaccaacatccaactggatttcggagatggcacggcagtctcc
tactccaacctgagctggatcgaagagggtatcagacatgtttacaagatggctgggata
ttccgtgtctcagccttggcggagaacaccctgggatttgatactaccaccttgtacctc
catgttacgtgtcctgtggaacatgtccagctgctggctccgtttgtggccatcaagaac
aaggcagtaaacctaacagcagtggtgtggcccgtccactccaggaccgtcacctacttc
tggtggctggggaacaacactgagccggtgatcagcttagacgggagcatctcgtacacc
ttcaccagcgagggaatgaacacggttacggtccaagtgtcttcagccaacaccatactg
caagacaccaagacgatagcagtccaagagttcttcaaatctctgcttttatctttctcc
cctaatctggacgagtacaaccctgatgtccccgagtggagacaggatgtggggagagtc
attaagaaggctctgctccaagtgtcagactttcccgaggatcagctgttggttgcagtg
tttccaggtgtgccaacggctgctgagctcttcctgttaccacacaagaaccaatcagag
ggcaggaaaaagagcgaggaggagctagagcagatctctgagatacttgctagcgctctg
aaccagaatctggtggagtttgagctaaagccaggagcaagagtaatagtttacatcaca
cagctaactttggcacccttggtggattccatgccgagacacagcagttcagcaatgctg
atgctcctatcagtagtattcctgggtttagcagtgtttctcatctacaaattcaagaga
aaaatcccctggattaacatatacgcggaggtgaaccaggagaaagagcaggagatgatc
ggttcagtcaaccagagcgacagcacgcctaagatcaccctcagtgagttcactacggcc
aaagaagtaatggagaaggagatggacaccagggttaaacggcgaattggacatgcctgc
gagagcacaagggagattcctaactgtactagcgtgtaa
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