KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112233772
Entry
112233772         CDS       T05605                                 
Symbol
ubap2a
Name
(RefSeq) ubiquitin-associated protein 2a isoform X1
  KO
K26545  ubiquitin-associated protein 2
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:otw04121]
    112233772 (ubap2a)
   03400 DNA repair and recombination proteins [BR:otw03400]
    112233772 (ubap2a)
Ubiquitin system [BR:otw04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Multi subunit type E3 associated proteins
    112233772 (ubap2a)
DNA repair and recombination proteins [BR:otw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     112233772 (ubap2a)
SSDB
Motif
Pfam: UBAP2-Lig UBA_RAD5A GIP1_N UBA_4
Other DBs
NCBI-GeneID: 112233772
NCBI-ProteinID: XP_024257394
LinkDB
Position
LG02:complement(47029046..47067083)
AA seq 1218 aa
MMTSLGGDKARGTRDKALPAATHATQPQKQLQATAEQIRLAQMIYDKNDAEFEDKVNQLM
EVTGKIQDECMVALHDCNEDVNRAINFLLESTSDTTSWETVGKKKPLAKDGPTEGKENRE
KRGGEREGSRARGGSNRRGRGASNRSRQVERVRPEENGVEVVPGPLDRVSERGRRGGRGG
RGECQLVALSHMFQSTLPVGSGGRGRGRAPVGSKFSAQGMGTFNPADYTPEQGTGTTQGD
AWESGANNSNSTDGTVAWRSTLEDWAAEDWSEEMSLSETKVFTASSAPAPQNHLTPGQSL
DLPSLLQKPVGEGRGGGGDAPSTQSLVFTNSHHHPPRNGSAIGTSSTSYAHAALSSVLGA
GFGDLGQSKRSQSSPGAQILEQLKGPGLGPLPSSQAAPPPSTQGASNSSLGSRLPGLGGA
APVLPLPSTSSWDIKVPEPSATSSSHTSHFSRDFKLQPEPSLVLSQLAQRHGAPSLPIAR
QPSPAQSPSPIQGPPLATIGAKPAHSAGPDTQGSNSLQQHRVPQLKAQKRRIPPTSKIPS
SAVEMPGSADVPGLNVQFGALDFGSEAALPDFGTVETCVTGGSRESTPAPQSQTSLYSNP
LSESMSTPLSVPLPSSEPVYHSPSVPMPSLTPSSMGTVSSSTPSSSISSSVPSSSSTSPF
VSVGSGYDCGPVAPHSHLAFSQSKEAPGPIMNGLNGVRTSAMDPSSASSTPKPESPSLSI
STSSAPAPSALMPSHSSALPSLPHDMPSASLAPLSSHGSSSHSSLTYTSVDSSVSSLAPS
SGSYSSAPAQAPAQAPAQSLHQVNSGMAHIMGTMSHMNSMVSSMGGSGHHASQALGLSAN
GTTAQANLSSAPRTAPLLSSSTGKAPPNLSQGVPPLLPNQYIMGPGGLLPAYPQIYGYED
LHMLQSRLPMPSLQDYYGITFPGPAALSGRDGSLANNPYSGEVTKFGRGDSTSPAPSSLS
AQQQPQQGQSQGQNQAQPQPPQPQPQGQPQGHHNSQQQQAFLPPGYSYTGLPYYPGMPGA
AFQYGHTMFMPQGQGPAKQHGVGLGNPSASPFQQQQPSGYGQHTFSSGYEDLTQGQAGVD
YSKGYSNSSQSQAKSAATGPGKGGISVTSGNSGVPEISGSVYNKTQSFDKQGFHAGTPPP
FNLPSAMGGPGGAPGGYAPAPFLHILQPAHQQPHSQMLHHHLAQDGQGGPSQRGQSSSMQ
QKGQVNKSSYGSSPYWGN
NT seq 3657 nt   +upstreamnt  +downstreamnt
atgatgacatcgttgggcggcgacaaagcccggggcactcgggacaaagcgctgcccgct
gccacacacgcaactcaaccacagaaacagctccaggcgactgcagagcagatccgactc
gcccagatgatctatgacaagaatgatgctgagtttgaggacaaagtgaaccagctgatg
gaggtgacaggaaagatccaggatgaatgcatggtagcgctccacgactgcaacgaggat
gtcaacagagccatcaacttcctccttgagagcacctctgatacgacctcatgggagaca
gttgggaagaagaaacccctagcgaaggacggcccgacggagggcaaggagaaccgggag
aagagaggaggagagcgagagggcagcagggcccgcggagggagcaatcggagaggcagg
ggggccagcaaccgcagccgccaggttgagagagtgcggccagaggaaaatggtgtggag
gtggtccctggccctttggacagagtgtcagagcgaggtcgcagggggggaagagggggt
agaggtgagtgtcaattagtggcactttctcatatgttccagtcaacactcccagtcgga
tctggaggcagaggaaggggcagggcaccagtgggtagcaagttctcagcccagggaatg
gggacctttaacccagcagactacaccccagaacaggggacagggaccacacaaggtgac
gcttgggagtcaggggccaacaacagcaacagcacagacgggacagtggcctggaggagt
actctggaagactgggctgctgaggactggagcgaagagatgagtctctccgagaccaaa
gtgttcaccgcctcaagtgcacctgcacctcagaaccacctcacacctgggcaaagtctg
gacctgccctctctgctgcagaagccagtgggagaaggaagaggaggaggaggggatgcc
ccctctacccagagcctggtctttaccaactcccaccatcaccccccccgcaacgggtcg
gccattggcacaagcagcaccagctatgcacacgccgccctgtcgtcagtgctaggggca
ggtttcggggacctgggccagtctaagaggagtcagtccagtccgggggcccagatcttg
gagcagctgaagggcccgggcctgggtcctctcccatcctcccaggcagccccccctccc
agcactcagggggccagtaacagctctctggggagtagactcccagggctaggaggagcc
gcccctgttctcccactgccttccacttcaagctgggatatcaaggtcccagagcccagc
gccacatcctcctcacacacctcccacttcagccgggactttaagctgcagcctgagcca
tccctggtgctgagccagctggcccagagacacggcgccccctctctgcccattgctcgc
cagcccagcccagcccaatctccctcccccatccagggaccccccctggccaccatcggt
gccaagcctgcccacagcgccgggccggacactcaaggcagcaactcgctgcagcagcac
cgcgttccacagctaaaggcccagaaacgaaggatacctcccacctctaagatcccctcg
tcggcggtggaaatgcctggctctgccgacgtcccaggtcttaacgttcagttcggagca
ctggactttggctcggaggcagccctgccggactttggcaccgtggagacgtgtgtcacc
gggggctccagggagtccaccccggccccacagagccagaccagcctctattccaatccc
ctcagtgaatctatgagcacccctctttccgtccccctcccatcctctgagcctgtctac
cactccccgtcggtgcccatgcccagcctgaccccctcctctatgggtacagtcagctcc
tccactccatcctcctccatctcctcctcggtgccctcctcctcttccacgtctcccttt
gtctcagtggggagcggttatgactgtgggcccgtggcccctcactcacacctggccttc
tcccagagcaaagaggcacccgggccaatcatgaacggtctgaatggtgtaaggacgtct
gctatggacccttcgtcagcctcctctacgccaaagccggagtctccctctctgagcatc
agtaccagcagtgcccctgccccctctgccctcatgccctcccacagttcggcactcccc
agtctgccacacgacatgccctctgccagcctggcaccactcagcagccatggcagcagt
agtcattcctctctcacttataccagtgtagacagtagtgtgagctctctggcaccctcg
tctggctcctactcctctgccccagcccaggccccagcccaggccccagcccagtcactc
caccaggtcaacagcggcatggctcacatcatgggcaccatgagccacatgaacagcatg
gtcagtagcatgggtggcagcgggcatcacgccagccaagcactggggctcagtgccaac
gggaccacggcccaagcgaacctctcctcggcccccaggaccgcaccgctgctctcctcc
tcaactggtaaagctcctcctaacctgtctcagggggttcccccactactgcccaaccag
tacatcatgggcccaggaggcctgctgcctgcctacccgcagatctacggctatgaggac
ctccacatgctacagtccagactgcctatgccctctttgcaggattactacggaatcaca
ttccctggtcccgcagcactctctggcagagatggtagcctcgccaataacccctactca
ggtgaagtcacaaagtttggcaggggtgactccacctcccctgcgcctagcagcttgtcg
gcccaacagcagccccaacagggccagagccaagggcagaaccaggcccagccacaaccc
ccccagccccagcctcaaggccaaccccagggccaccacaacagccagcagcagcaggcc
ttcctcccgccaggctacagctacacaggcctgccctactaccccgggatgcctggcgct
gccttccagtacggccacaccatgttcatgccccagggacaggggccagccaagcagcac
ggtgtgggtttgggaaacccctcagccagccccttccagcagcagcagcccagcggctac
ggccagcacaccttcagctcagggtatgaggacctgacccagggccaagcaggagtagac
tatagcaagggctatagcaactcctcccagagccaggccaaatctgctgctacaggcccc
ggtaaaggcggcatatctgtgacgtcaggcaactccggggtcccagaaatcagtggaagt
gtttacaacaagacccagtcctttgataagcagggtttccatgcggggactccccctcct
ttcaacctgccttcggctatggggggtcctggaggggccccgggtggctacgctcccgcc
cccttcctccacatcctgcagcctgcccaccagcaaccccactctcagatgctgcaccat
catctggcccaggacggacagggaggtcctagccagcgaggccagtctagcagcatgcag
cagaagggccaggtcaacaagtccagctacggcagctccccatactggggcaactga

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