Oncorhynchus tshawytscha (Chinook salmon): 112233998
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Entry
112233998 CDS
T05605
Symbol
arid1ab
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112233998 (arid1ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112233998 (arid1ab)
03021 Transcription machinery [BR:
otw03021
]
112233998 (arid1ab)
03036 Chromosome and associated proteins [BR:
otw03036
]
112233998 (arid1ab)
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
ARID
112233998 (arid1ab)
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112233998 (arid1ab)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112233998 (arid1ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
112233998
NCBI-ProteinID:
XP_024257731
LinkDB
All DBs
Position
LG31:14891726..14963132
Genome browser
AA seq
2320 aa
AA seq
DB search
MAAQVASVATLNTSPPSELKKPDRDPLEESVPGEKQHVNKEPGSDNGSPGQKDLQDGADA
GNVGGGGEPDMKNGNGNSSRVNNNNNQNDTGGPEGNNHSGMGHHHQGSFPPPPYGYNQHY
SRGPFHQHGGQQSPGMAAAAGPAVQPGNMMDPYPPNTHEHGFPNHFNNYSPFPNRTSYQG
QGYAMNSPRNNQPPAAGGQPGKQQPAGGTTAMAASYNNQRYNIGNLQPTSTPTLNQLLTS
PSSTRTYQNYPQGDYSNQEGASKGAADMASSQYGGGHPGWQQRTHHPPPMSPGNTGPGNT
GPLNRNQPPSPMDQAGKMRGQGYGGVNPYSQQQGQGQGPPPPGAQQGASYPGQGYGPPGS
QRYPMGMQGRTPGGMGGMQYGQQMAGYGQQGPGGYGQQSQGYYGQHGPPPHAGQQQSPYP
QQVHTSQGQPSAQHSQPGAPGPYPQGQGPPQVGPPQIQPPYNQGPQQQVQAVPQGQGPQP
SYPQQQGPQGQGQQPPQQQLPSQQQGPPQQQERVAPPQAQPPPGHQQPPGHQPSPGHQPP
PSHGGQQPPTGHQPSPGPQGHHPSPGHGGPPQQQGQSQQGQPSPYSQTPPLQQSPFQRFP
PPPQELSQDSFSSQSSAPPSNQPMTSTKSGAEDSMQGRPSSLPVSPPKTLTDLSGSIDDL
PTGTEGALSPGVSTSGVSSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVTPS
RSGPLSPAAVPGNQMPARPPSAHSDSIHSSMNQSAMGQDRVYMRNPQMPPYGSPQQPGSA
LSPRQSSGGQMHPGMGPYPQNNSMGNYGPQGGQYGPQGYPRQPGYSGMPNANYPGGPGGM
NPMPGQAGGAPYAGMPPGRMGPGQMGARPYGPGMGPNMGPGMPPQVTSGMCPPPGMNRKV
PGGPPDAASAMHHGGPGANSIHNRPPGYPPNMPQGMMGAGSPYGPGPGAINSMQGMLNQG
GPYGGGPMGGNMANNTPGIVPSPEFGIDVKLNPAQKMNNKVDGTPKPETKKVKKKSNSST
TTNEKITRLYELGPEPERRTWVDRYLAFTEEKATGMTNLPAVGRKPLDLFRLYVSVKEIG
GLTQVNKNKKWRELSTNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDLFIDAK
KTTQPKIQPPSPAGSGSLQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPMPGVRLQD
PFADGGDPAFARRNSMTPNSYQPGMGGPEMMGRMGPYEPNKDPFGGMRKAGEQFMTPALG
PNSGVEGQFNRGPPGPMVPNMQMGQRQQYPYVPGYDRRQEPGMGPDGSMGPGAPQPNLMP
SGADSGMYSPSRPPPVQRHDSYGNQYPGQGAPPGGPYPNQQPGMFPQQQPNYKRSPGDGA
YGPPAKRHEGDGMYNVPFSGQQQPGPQPPGAPPGQQDMYNQYNTGYPGSDRRPPGPQGQF
PFPFGRDRGPSSANSQSPMPPQMMGSPMQAAPDGPQCPMWQGRNEMGYPNYPNRQGPPGP
GQGPPQGYHGMNRSEEMMPGADQRINHEGQWPGHPNQRQPPYGPGGSGPPMSRPLQSNYQ
SSQNHISQVSSPAPMPRPMESRTSPSKSPYMHSGIKMQKAGPPVPASHIGQAPVQPPLIR
RDISFPPGSVEASQPILKPRGRLTMKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLY
DDNSISTFNLCQLPGFLELVVEYFRRCLIEIFGILKEYEVGDPGQRMLIDPHTADEDCSD
EELPEQEDMEEDEEEEDDEEEEEERKSNTDTTTSSQQVQVKQEGVGKEEKSTTEKLTAEE
EREGGESSSSSPAPQDSSLSQEKPKQASKFDKLPIKMVRKKDPFPGCRSSKLGRRQSFDS
GLIHWSIGGGDTTEHIQTHFESRSDLLKQRKRVPPSVTESRKKVAMTVSEHPEKTKPGKE
QTTSPAEKTTKTSAPTTPAPVTATIDDVLSARPGSVTEEAVRGAAEEQKESGGQFLFSIR
QAQQSRRNITILEDEPHSKDETPLSTLSDWQDALARRCICVSNIVRSLSFIPGNDLEMSK
HPGLLLLLGRLVLLHHRHPERKQAPVTYEKEEDEGVSCERDEWWWDCLEVLRENCLVTLA
NISGQLDLSIYPESICLPLLDGLLHWAVCPSAEALDPFPMLGPHGALSPQRLVLETLSKL
SIQDNNVDLILATPPFSRLEKLYGTLVRLVGERKVAVCREMSVVLLANLAQGDSMAARAI
AVQKASVGNLLGFLEDSLAATQYQQSQSSLMHLQGAHFEPTSVDMMRRAARALHAMAKVE
ENHSEFTLYESRLLDISVSPLMNSLVSHVICDVLFLIGQS
NT seq
6963 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggtcgctagcgtcgccactctcaacactagcccgccatccgaacttaaa
aagccggatcgggacccactggaggagtcggtaccgggagagaaacaacatgtaaataag
gaaccgggatctgacaacggatctcctggacagaaggatctgcaggacggggccgatgct
ggaaatgtagggggaggaggggagcctgacatgaagaacgggaacgggaattcgtccagg
gtgaataataataacaaccagaatgatactgggggaccggaggggaataaccactccggg
atgggccatcaccaccagggctcattccctccacctccttacggttacaaccagcactac
agccggggcccttttcatcaacatggcggacaacaaagccctggcatggcagctgcagcg
gggccggcagtgcagccaggtaacatgatggacccatacccgcccaacacacacgagcac
ggcttccccaaccattttaacaactacagccccttcccgaaccggacttcgtatcagggc
caaggatacgccatgaattccccgcgtaataaccagcccccggcggctggggggcagcca
ggcaagcaacagccagcaggcggaactacagctatggctgcctcgtacaataatcagagg
tataacataggaaacctacaacccacgtctaccccgactttaaatcagcttctaacgtct
cccagctcaacgaggacctaccagaattacccacaaggagactatagtaaccaggaaggg
gctagcaagggagcagcagatatggccagcagtcagtatggtgggggccatccgggttgg
caacaaaggacccaccacccgcctccaatgagcccagggaacacgggacctgggaacacg
ggacctctgaacagaaaccagccccccagccctatggaccaggcagggaagatgagaggc
caggggtatggtggagtcaacccctactctcagcagcaaggccaggggcagggccctcct
cctccaggggctcaacagggtgcctcctacccaggccagggctacggacccccagggtct
cagagataccccatgggcatgcagggacgcacccccggcggcatgggtggcatgcaatac
ggacaacagatggccggctatgggcagcagggtccagggggctacggtcagcagagccag
ggctactacggccagcatggccccccaccacacgctggtcagcagcagtccccctacccc
cagcaggtccacacctcccagggtcagccctcagcccaacacagccagcctggggccccc
ggcccctatccccagggccaaggccctccgcaggtgggtccaccacagatccagccgccc
tacaaccagggaccgcagcagcaggtccaggccgtgcctcagggtcagggcccccagccc
agctaccctcagcagcaaggaccccaagggcaaggacagcagcctccacagcagcagctc
ccctcgcagcagcaaggacccccccagcagcaagaaagggtggcccctccacaggcccag
ccacccccgggccatcaacaacccccaggccaccagccctctccaggccaccagccaccc
cctagccatggtgggcagcagccacccacaggccatcagccctccccaggcccccagggc
caccacccctctccaggtcacggtggacccccccagcagcagggtcagtctcagcagggc
cagccctcaccctactcccagaccccacccctgcagcagtcacccttccagcggtttcca
cctccaccgcaggagctctcccaggactcgttcagctcccagtccagtgctcccccctcc
aaccagcccatgacttccacaaagagtggagcagaggacagcatgcagggacggccttct
agcttaccggtgagccctcccaagacattaacggacctctctggttctatagatgacctg
ccgactggtacggagggggctctgagtccgggcgtcagcacgtcgggggtgtccagtagc
cagggtgaacagagtaaccccgcccagtcacccttctcacctcacacctcgccccacttg
cctggcatccgcgggccctccccctcccccgtgggctcccctgccagcgtcaccccctcc
cgctctggacccctctcgcctgctgccgtgccaggtaaccagatgcctgcccggccaccc
agcgcccattcagacagcatccactcatccatgaaccagtcagccatgggccaggacagg
gtgtacatgcgtaacccccagatgcctccgtacgggtcgccgcagcaacctggctccgcc
ttatccccccgccagtcgtcgggaggccagatgcatcctgggatggggccctaccctcag
aacaactccatggggaactacggccctcagggtggacagtacggaccacaaggctacccc
agacagcctggctacagtggcatgcccaacgccaactatcctggaggtccaggaggcatg
aaccctatgccaggccaggctggtggtgcgccgtacgctggcatgccccccggcaggatg
ggtccaggtcagatgggtgctcgcccctacggccctgggatgggccccaatatgggccct
ggcatgcccccacaggtgacctctgggatgtgtccccctccaggcatgaacaggaaggtc
cccgggggccctccggatgcagcctccgccatgcaccacggtggccccggagctaactct
atacataacaggcctccaggctacccccccaacatgccccaggggatgatgggagcaggg
tctccgtacggcccggggccgggggccatcaacagcatgcagggcatgttgaaccaagga
ggaccctatggaggagggcccatgggagggaacatggccaacaacacacccggcattgtt
cctagccctgagtttggcatcgatgtcaaactgaacccagcccagaagatgaacaacaag
gtggacggcacgcccaaacctgaaaccaagaaggtaaagaagaagtcaaactcttcgacg
acgaccaatgagaagataactcgtctgtatgagctgggtccggagccggagaggaggacg
tgggtagaccggtatctggcgttcactgaggagaaggccacgggcatgaccaaccttccc
gccgtgggacgcaaacccctggacctcttcagactttacgtctcggtcaaagagatagga
ggcctcacacaggtgaacaagaataagaagtggagggagttgtccaccaacctgaacgtg
ggcacgtccagcagcgctgccagctctctgaagaagcagtacatccagtgtctgtacgcc
ttcgagtgcaagatcgaacgtggcgaggacccgcccccagatctcttcatcgacgccaaa
aagaccacccagcccaagatccagccccccagcccagctgggtctggatctctgcagggc
ccccagaccccccagtccaccagtagttccatggcggaggggggggacctgaagcccccc
accccagcctccacccctcacagccagataccccccatgccaggagtcaggctgcaggac
ccgtttgcagatgggggcgacccggcgtttgccagacggaactctatgacccctaacagc
taccagcctgggatgggtggtccggagatgatggggcgcatggggccctatgaacccaac
aaggacccctttggtggtatgaggaaagctggagagcaattcatgactccagcgttgggg
cctaacagtggtgtggaggggcagttcaacagaggccccccagggcccatggtccccaac
atgcagatgggtcagagacaacagtacccctatgtacctggatatgacaggagacaggaa
ccagggatgggtcctgacggcagtatgggtcctggagccccccagcccaacctgatgcct
tcaggggccgattcagggatgtactcccccagccgacccccaccggtgcaacggcatgat
tcctatggtaatcagtatcctggccaaggagcgccacctggtggcccctaccccaatcag
cagccaggaatgtttccacagcaacaaccgaactataagcggtctccaggcgacggggcc
tacggtcccccagcgaagcgtcacgagggggatgggatgtacaatgtccccttcagcggt
cagcagcagccagggccccagccccctggggcccccccgggccaacaggacatgtacaat
cagtacaacacaggttaccccggctccgaccgccgaccacctggcccccagggccagttc
cccttccccttcggccgagaccgggggccctctagcgcaaactcccagtcccccatgcct
ccccaaatgatgggcagcccaatgcaggcggcccctgacggccctcagtgccccatgtgg
cagggacgcaacgagatgggctaccccaactaccccaaccgccaggggcctccgggacct
ggccaggggcccccccaggggtaccacggcatgaaccggtctgaggagatgatgccaggg
gcagaccagcggattaaccacgagggccagtggccgggacaccccaaccagagacaaccc
ccctacggaccggggggctcgggtccccccatgtccagacctctgcagtccaactatcag
agctcccagaaccacatatcccaggtgtccagtcctgcccccatgccccgccccatggag
agccggacgtccccctccaagtcgccctacatgcactccggcatcaagatgcagaaggcg
gggccccccgtgcctgcttcccacataggccaggcccctgtgcagccccctctcatcagg
cgggacatatccttccccccagggtcggtggaggcctcccaacccatcctcaaacccaga
ggaagactcaccatgaaagacatcggcaccccagaggcctggagagtgatgatgtcactg
aagtcaggcttactagctgagagcacttgggccttggacaccattaatattctactgtat
gatgacaacagcatttctactttcaacctctgccagctgcctgggttcctggagctggta
gtggagtatttcagacgctgcctcatcgagatctttggcatcctgaaggagtatgaggtg
ggagaccctggccagaggatgctcatcgacccgcatactgccgacgaagactgctctgat
gaagagctacctgagcaggaggacatggaggaggacgaggaagaagaggatgacgaagag
gaggaggaggagaggaaaagcaacacagacaccaccacctcgtcgcagcaggtccaggtg
aaacaggagggggtggggaaagaggagaaatccacaacggagaagttgacagcagaggag
gaaagggaaggaggagagtcttcttcctcctccccagcccctcaggactctagcctctcc
caggagaaacccaaacaggccagtaagtttgacaagctgcccatcaagatggtgcgtaag
aaagaccccttccccggttgccgttccagtaaactaggccggcggcagagctttgacagt
ggactgatccactggagtatcggcgggggggacaccacggaacacatccagacccacttc
gagagccggtccgacctcctcaagcagcggaaacgggtgccgccgtcagtcaccgagagc
aggaagaaggttgccatgactgtgtcagaacaccctgagaagaccaagcctggcaaggag
cagaccacctcccctgcagagaagaccaccaagacctccgccccaaccacacctgccccg
gtcaccgccaccattgacgacgtgctgtcggcccggccgggctcggtgacggaggaggcg
gtgcgaggagcagccgaggagcagaaggagagcgggggacagttcctgttctccatccgc
caggcgcagcagagccgacgcaacatcaccatcctggaggacgagcctcacagcaaggac
gagaccccactgagcacgctgtcggactggcaggatgccctggctcgccgctgcatctgc
gtctccaacattgttcgatcgctctccttcatccccggcaacgacctggagatgtccaaa
cacccagggctgctgctgctgctgggccgtctggtcttgctccaccaccgtcacccagag
aggaaacaggcccccgtcacctacgagaaggaggaggacgagggggtgagctgtgagagg
gacgaatggtggtgggactgtctggaggtcctcagggagaactgcctggtcactctggct
aacatctccggccagctggacctgtccatctacccagagagcatctgtctgcccctgctg
gatggcctgctccactgggctgtttgtccctcagccgaggccttggaccccttccccatg
ctggggccccacggggccctatccccccagagactggtgctggagaccctcagcaagctg
agcatccaggacaacaacgtggaccttatcctggccacgcctccattcagccggctggag
aagctgtacgggacgctggtgcgtctggtcggggagaggaaggtggctgtctgcagggag
atgtctgtggtcttactggccaacctggcccagggagacagcatggcggccagggccatc
gccgtgcagaaggccagtgttggtaacctcctgggcttcctggaggacagtctagcagcc
acgcagtaccagcagagccagagttccctgatgcacctacagggggctcactttgagccc
actagtgtagacatgatgcggcgagcggcccgcgccctgcacgccatggctaaggtggag
gagaaccactcagagttcaccctgtacgagtcccgcctactggacatctctgtctcacca
ctcatgaactctctggtgtcccatgtgatctgtgacgtactctttctgattggccagtca
tga
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integrated database retrieval system