Oncorhynchus tshawytscha (Chinook salmon): 112234101
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Entry
112234101 CDS
T05605
Name
(RefSeq) polycomb protein SCMH1 isoform X4
KO
K11461
polycomb protein SCMH1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
112234101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112234101
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
PRC1.4 specific proteins
112234101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MBT
SLED
RBR
SAM_1
SAM_2
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
112234101
NCBI-ProteinID:
XP_024257862
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All DBs
Position
LG03:29667877..29713688
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AA seq
725 aa
AA seq
DB search
MRKPVPQKAIEWKDGRQIKHARSGRPSRVPSQYQGGHFSWDKYLKETGASAAPAHCFRQG
ATPPVNEFKAGMKLEAQDPRNTTSTCIATVVGLTGSRLRLRLDGSDNKNDFWRLVDSSEI
QPIGNCEKNAGMLQPPLGFRLNASSWPMFLLKTLNGAEMAPARIFHKQEPPAPEQNSFQV
GMKLEAVDRKNPHFICPATVGALRGVEVLVTFDGWRGAFDYYCRYDSRDIFPVGWCSLTG
DNLQPPGTKAVLPKTLGCLSDGSEGTAMHPMPGQPHGQRGRKPGRRKAKLTGLWGQKGAG
VGTQAPLPRNGLEHIKVPKKRGPKPGSKLGWAKRAGWLEGAMAGPGRPMSRPRGRLPADW
AQRMALQEGQVESIKIPKKRGPKPGSKRKPRVVPNPVPVSPNSSMPEPDTSTVPLDNATI
PSAALHAATVCVYLNKYGKVGPHLDGRRVQQLPDHFGPGRASSVLQQCVQACVDCAHNQS
SVFSCLKPGHGGEVISAHFDQQHHTLTLPTVNSVTYVLRFLEKLCHNLYCDPLFGSQPVP
QGGLHYDSHAHPERRSFREGLTTGPGRGSKRFLQDSYYSPLPHKLAKNPCLSLEGEPFLM
VNGVGGSGHLKKSPLSPGSTGQPLGLQSPTKLLHLNSSGSERFRESPRPSGQDPNLWTVK
DVMQFIRDIDPLLAPHADLFRKHEIDGKALLLLRSDMMMKYMGLKLGPALKLTFHIDKLK
HGRPN
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgaggaagccagtgccacaaaaagctattgagtggaaagatggcaggcagatcaagcat
gcccgaagtggccgtccctcccgggtcccatcgcagtaccaaggaggtcacttcagttgg
gacaaatacctgaaggaaacaggtgctagtgctgcacctgcgcactgcttcagacagggc
gcaacacctccagtgaatgagttcaaggcgggcatgaagctggaggcgcaggaccctcgg
aatacaacgtccacctgcattgctacggtggtgggcctgactggatcgcggctgcgcctg
cgcctcgatggctccgataacaagaacgacttctggcgcctggtggactcgtcagagatc
cagcctatcggcaactgcgagaagaacgcaggcatgctgcagccgccattgggcttccgt
ctgaacgcatcctcctggccgatgttccttctaaaaacactcaacggagccgaaatggcc
ccagcacgcatctttcacaagcaggagcccccagccccagagcagaactccttccaggtg
ggcatgaagctggaggcggtggaccgcaagaacccccacttcatctgtccggccacagtg
ggagcgctgcgtggcgtggaggtgctggtcaccttcgacggctggcggggtgccttcgac
tactactgccgctacgactcccgggacatcttccccgtgggctggtgctctctcaccggg
gacaacctgcagccgccaggcaccaaagcagtgctacccaagaccctcggttgcctttca
gacggtagcgagggaacagccatgcaccccatgccaggacagccgcatggccaacgggga
cgcaagccaggccgcaggaaagccaagctgacagggctctggggccagaagggggccgga
gtaggaacacaagcccccctgcccagaaatggactggagcatatcaaggtccccaagaag
agaggccccaaaccggggagtaagttgggctgggcgaagagagcaggctggctggagggt
gccatggcaggcccagggcgacccatgtcccggcccagagggaggctgccagccgactgg
gcccagaggatggccctgcaggagggtcaagtggagtctatcaagatccccaaaaagaga
gggcccaagcccggcagcaagagaaaaccgcgggtggtgcccaaccccgtgcccgtttcc
cccaacagcagtatgccagagccagacaccagcacggtgcccctggacaacgccaccatc
cccagcgccgccttgcatgctgcaacagtgtgtgtatacctgaacaagtatgggaaggtg
ggaccccacttggacgggcggcgggtgcagcagctgcccgaccactttggtccaggccgg
gcttcctcggtgctacagcagtgtgtccaggcctgtgtggactgtgcccacaaccagagc
tctgtcttctcctgcctcaagccaggtcacggaggagaggtcatatcagcccactttgac
cagcagcaccataccctcaccctgcccacggtcaacagcgtcacgtacgtcctgcgcttc
ctggagaaactctgtcacaacctctactgtgaccctctgtttggcagccagcccgttccc
caagggggcctgcattacgatagccacgcacacccagaaaggagaagttttagggagggc
ctcacgacgggtccaggaagaggctccaagcggttccttcaagactcctactacagcccc
ctcccccacaagctggccaaaaacccttgcctctccttggaaggtgagcccttcctcatg
gtgaacggtgtagggggttcggggcacttaaaaaagagccccctgtccccgggctcgaca
gggcagcctctgggtctgcagtcccccaccaagttgctacatctcaactcttcaggctct
gagcgtttcagagagagccctcggcccagtggccaggaccccaacctgtggacggtgaag
gacgtcatgcagttcatcagagacatagaccccctactggccccccacgcagatctcttc
agaaaacacgagattgatggcaaagccctcttgttactacgcagcgacatgatgatgaaa
tacatgggcttgaagctcgggcctgccctaaaactcacattccacatcgacaagctcaaa
catggacgcccaaattga
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