KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112234332
Entry
112234332         CDS       T05605                                 
Name
(RefSeq) RNA polymerase II elongation factor ELL
  KO
K15183  RNA polymerase II elongation factor ELL
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    112234332
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:otw01009]
    112234332
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:otw03021]
    112234332
Protein phosphatases and associated proteins [BR:otw01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     112234332
Transcription machinery [BR:otw03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     112234332
    Little elongation complex (LEC)
     112234332
SSDB
Motif
Pfam: ELL Occludin_ELL UBR1-like_wing CC149 Seryl_tRNA_N T4SS
Other DBs
NCBI-GeneID: 112234332
NCBI-ProteinID: XP_042161246
LinkDB
Position
LG01:complement(18892296..18935066)
AA seq 650 aa
MAALKEEQCYGLSCGRVSNGSNVSVFHVKLTDSALRAFEGYQSSKDLSSQPLIRFTGNQG
KISIPRSENPNELRTFTFYLSNVGRDNPQGSFDCIQQYITSEGSIQLDCLGGIQDKITVC
ATDDSYQKARQSMAQAEEETRSRGAIVIKPGGRYVGKKVQIRKPAPGLSDIAPSRRTSRP
VIISSSMGKKSTAQQRPLRERLTHLLALKPYRKPELILRLQKDGLLPFDKDSLDSLLQQV
ANLNGRDNTFTLKDSLFKDIQKDWPGYTEGDQQLLKRILVRKMSQAQSQTQNTTTTTVAP
PPPVEVPVPVSPPKELSSSSPLQKRPAADFIDPLANKKPRISHLANKAAGPVNGKLSSSN
GKEVSGAVVAAVGDSVTSSSQLPLLDIPRPFDPLSDVSNDSSHNGRDCENQEAAMAERLS
QPPVFSGPAALSVPSLGHSSPRHMGLDRPRGKSSSPSLHGKSKKKSKKHKDKEKSKEREK
ERERKGVEERIPEPRKACDITSSPDNLKSSSIPHRSTDLNGMCNNTSVPSSSTEMADYLS
KYTVIGSSEQRQTYKNDFNTEYSEYRGLHSRIEGITRQFTVLDTELKQLQQGTDQYKTIH
NQILQEYRKIKKTNRNYSQEKNRCEYLHNKLAHIKKLIAEYDHQQLHNWH
NT seq 1953 nt   +upstreamnt  +downstreamnt
atggcggcgttgaaggaggagcagtgctacggactgtcctgtggacgagtgagcaatggc
agtaatgtctccgtctttcacgtaaaactcactgacagcgccttgagggcatttgaaggt
taccagagtagcaaggacctgtcttcacaaccgctgatccgatttactggaaaccaaggg
aaaatctcaataccacggtcggaaaatccaaatgagctgcggacgtttactttctacttg
tccaatgttggtagagacaacccacagggaagtttcgactgcattcagcaatacatcacc
agtgaagggagcattcagctggactgcctgggtgggatccaggacaagatcactgtgtgt
gccacagacgactcctatcagaaggccaggcaaagcatggctcaggcagaggaggagacc
cgcagcaggggtgcgatcgtcatcaagcctggggggagatacgtgggtaagaaggtgcag
atccggaaaccagcgcctggcctgtctgacatagctccgtcgcggcggacgtcgcggcct
gtcataatctccagcagcatggggaagaagagcacggcgcagcagaggcccctgagggag
cgcctcacccacctgctggccctcaagccctataggaagccggagctcatcctgcgcctg
cagaaggacggcctcttgcccttcgacaaagactctcttgacagcctcctgcaacaggtg
gctaacctaaatgggagagacaacaccttcacattgaaggactctttgtttaaggacatt
cagaaggactggccaggctacactgagggagaccagcaacttctgaagcggatccttgtt
cggaaaatgagtcaggcccaaagtcagactcagaacacgaccaccaccacagtggctccg
ccacctccagttgaggtcccagtcccagtgagccctcccaaagagctgtccagcagctcc
ccgttgcagaaacggccggctgcggatttcatcgatccactggccaacaaaaagcccagg
atatcacacctcgccaacaaggcagcgggaccagtaaatggcaagctgagttcctctaat
gggaaggaggtgagcggggccgtggtcgcggcagtaggagacagtgtgacatccagctcc
cagctccccctgctggacatcccccggcccttcgacccactctctgacgtcagcaacgac
tccagccacaatggccgggactgtgagaaccaggaggcagccatggccgagagactgagc
cagccacctgtcttctctgggcctgcagcactgtccgtaccaagcctgggccactcgtcc
cccagacacatgggcctcgacaggccccgaggcaagagctcctcgccttccctgcacggc
aagtccaagaagaagtccaaaaaacacaaagacaaggaaaagtccaaggagagagagaaa
gagagggagaggaaaggagtggaggagcgtattcctgaaccaagaaaggcctgtgacatc
acctccagccctgacaacctgaagagcagcagtattccacacaggagcacagatctcaat
ggaatgtgcaacaacaccagtgttccttcgtcatcgactgagatggcagactatttatcg
aagtataccgtgattggctcttccgagcagcgtcagacctacaagaatgactttaatact
gagtacagtgagtaccgtggcctccactctcggatagagggcatcactcggcagttcact
gtgctcgacactgagctcaagcagctccaacaaggcacagaccagtacaagacaatccac
aatcagatactccaagaatatcgtaaaataaaaaagacgaatcgaaactatagccaagag
aagaatcgctgtgaatatctacacaacaaactggcacatataaagaaacttatagcagaa
tatgatcatcagcaacttcataactggcactag

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