Oncorhynchus tshawytscha (Chinook salmon): 112234449
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Entry
112234449 CDS
T05605
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B-like isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04010
MAPK signaling pathway
otw04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112234449
04020 Calcium signaling pathway
112234449
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112234449
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
112234449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Motif
Other DBs
NCBI-GeneID:
112234449
NCBI-ProteinID:
XP_042167097
LinkDB
All DBs
Position
LG33:17778826..17992642
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AA seq
2275 aa
AA seq
DB search
MSERLDDTEPYFIGIFCFEGGIKIIALGFAFHKGSYLRNGWNVMDFVVVLTGILATVGSD
FDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGMLLFFAILMFAIIGVEFY
MGKFHSTCFTVDTGERAAAFPCGTEAPSRMCPNGTECTEYWIGPNYGITNFDNILFAVLT
VFQCITMEGWVDILYNANDASGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERV
EKRQDFLKLRRQQQIERELTGYLEWICKAEEVLLAEEDENAEEKSPLDGAWYKRKQNLPV
LKRGKVKKSKNELIGAEEGEDHFTDMSSVVPPGSPFGRASVKSMKLDSSSYFRRKERRMR
FFIRRMVKAQSFYWTVLCLVGLNTLCVAIVHYDQPEWLTTALYLAEFVFLGLFLSEMSLK
MYGLGARNYFHSSFNCFDFGVIIGSILEVVWSMIKPGASYGISVLRALRLLRLFKFTKYW
NSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEEETPTTNFDTFPAA
ILTVFQILTGEDWNAVMYHGIESQGGVRRGMFSSVYFIVLTLFGNYTLLNVFLAIAVDNL
ANAQELTKDEEKQEEEANKKLALQKAMEVKEVSPVSAANISIAVFVKQNRDVLSRSSSVS
SVHSPKEQQRANKIMSVWEQRTNQLRQNNLRASSEALFNELDPEERLRVSSALHLRPDMK
THNDRPLVVEPGNGDKPRPDKEDRDGADPQQEGGDPYGPQLRKHHRHRERNGENGESRHH
THHSRSRDHYHPDGPRPKERKVERSHSREGGQGHRHHHQAGSPEEGVNGGGEEREHRHHH
SHRQPREGNGALANGARVERKGRGHKEGNGEGNGERRRYRSRMVRAQSTLDGEECRENGK
RDGDWDQGHRASLDAQGESLATSPVQPPAGLQAGEKQEDADNQKNSHRASQAGLNSNTVH
IPVTITAPPRETTIIPSQYPMNNIDCESLPLNEEKKNLEEDEEELKNGPKHILPYSSMFV
FGQTNPVRRLCHYVVNLRYFEMCILSVITMSSIALAAEDPVQANAPRNNVLKYLDYVFTG
VFTFEMVIKMIDLGLLLHPGSYFRDLWNILDFIVVSGALVAFACSGTKGKDINTIKSLRV
LRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGKFFYCT
DESKSLEKDCRGKFLDYDRDDVAAQDREWRKYEFHYDNVLWAFLTLFTVSTGEGWPMVLK
HSVDATYEDQGPSPGFRMETSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKAMSECSL
EKNERACIDFAINAKPLTRYMPADKQSFQYKMWKFVVSPPFEYSIMTMIALNTVVLMMKF
HGAPELYEAMLKYLNIVFTALFTLECILKIIAFGPLNYLKAAWNVFDFVTVLGSITDILV
TEIKDKLINLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYA
IIGMQVFGNIELNEESAINHHNNFQTFFQALMLLFRSATGEAWHEIMLSCLSNRPCDKLS
GSGGKECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDASILGPHHLDEFIRV
WAEYDPAACGRMTYLDMHEMLRHMSPPLGVGKKCPPRIAYKRLVKMNMPIADDNTVHFTS
TLMALIRTALEIKLASGVLAQRLCDADLRKEISRVWPNLPQKTVDLLVTPYKIDEFNELI
CPFAVVNRELTVGKVYAALMIFDYYKQNRAKRLEQQLGLDFTGTIKNKKGAAFFRPMMPM
THMQEETPITTAKPPPPSQPEPEPQPEPPPVTTSLTNGDTVPSPRSAIKESISGDQLSQE
GQRSSTSSRTVQRGQSEDVPYSIKPQEPVEMRQVKNGADLEGYFGLEGHGRAASMPRLDS
QYYRNHPRHLPGTYLAPIPDISPIRRSASTLASQRPQEVSPRDHTLERPSQAQAQSSSAP
GQAQDRPYHHHHHHRCHRRRDKDRDKKQKSLDRASSVQPSSIAGLPADPAVEGLSMERAR
ERDRGRPQERRHHSAAGEKQRYYSCERYGGREHYHTKSAGPSRSTSPGETHDLGLFKQSI
GMAKGSQVVLTSAFSTPCRGRRQLPQTPLTPRPAVAYKTANSSPVQFGATGHKSSLSRGL
SEHSALLESPAMPVTRIGSDPNLGPQSRGAPPRSLPEEPDDFQDAVSTHGGGGGCSPRTS
ASASHGATEPSSAPAPQGRAGVPNGYHFTLGVNAGSSSSTRGTGSFREKEEDDWC
NT seq
6828 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaacgcctggatgacacagagccctactttattggaatattctgtttcgagggc
ggcattaagatcatcgccttgggctttgcattccacaaaggctcgtacctccgcaacggc
tggaacgtaatggactttgtggtcgtcctcactgggatcctggctacggtgggctcagac
tttgacctgaggactctgcgggcagtgagagtactcagacctctcaaactggtgtctggc
atccccagtcttcaggtggtattgaagtctatcatgaaggccatggtgcctctgctccag
ataggcatgctgctcttcttcgccatactcatgtttgccatcatcggagtggagttctac
atgggcaagttccactccacttgcttcactgtcgacactggtgagcgtgcggcagcgttc
ccctgtggcacggaggccccatccaggatgtgtcctaacggtacagagtgtacagagtac
tggatcggccccaactacggcatcaccaactttgacaacatcctgttcgccgtgctcact
gtcttccagtgcatcaccatggagggatgggtggacatcctctacaacgccaatgatgcc
tcggggaacacctggaactggctctacttcatccccctcatcatcatcggatccttcttc
atgctcaacctggtcctgggtgtcttatcaggggagtttgccaaagagagagagcgtgtg
gagaagaggcaggactttctgaagctgaggagacagcagcagatagagagagagctgacg
gggtacctggagtggatatgcaaggcagaggaggtgctgctggcggaggaggatgagaac
gcggaggagaagtcccctctggacggtgcgtggtacaagaggaaacagaacctcccagtg
ttgaagcgaggcaaggtcaagaagagtaagaatgagctgatcggtgctgaggagggagaa
gatcacttcactgacatgtcctctgttgttcccccgggctcaccgtttggccgggccagc
gtgaagagcatgaagctggacagttcatcctacttccgccgcaaggagaggaggatgcgt
ttcttcatccgtcgcatggtcaaagcccagagcttctactggacagtcctttgcctggtg
gggctcaacacactgtgtgtggccatcgtccactatgaccaacccgagtggctcaccact
gccctgtacctggcagagtttgtgttcctgggtctgtttctgtctgagatgagcctgaag
atgtacggcctgggagccaggaactacttccattcctctttcaactgcttcgactttggt
gtgataatagggagtatacttgaggtggtgtggtcgatgatcaaaccaggggcatcctat
ggcattagtgtactgagggctcttcgtctgctcaggttgttcaagtttaccaagtactgg
aactccctgaggaacctggtggtgtctctgctcaactccatgaagtccattatcagcttg
ctcttcctcctcttcctcttcattgtggtctttgctctgctgggcatgcaactttttgga
ggacagtttaatttcgaagaggagacaccgacgaccaacttcgataccttcccggcggcc
attctcaccgtcttccagattctgactggcgaggattggaatgcagtaatgtatcatggc
attgagtctcaggggggcgtgcggcggggaatgttctcctcggtctacttcatcgtcctc
acactctttggaaactacactctcctgaacgtcttcttggctatcgccgtcgacaacctc
gccaatgcacaggagctcaccaaggatgaggagaagcaggaggaagaagccaataagaag
ctggccctgcagaaggccatggaggtgaaggaggtcagccccgtgtcagcagctaacatc
tccatcgctgtttttgtaaagcaaaatcgagatgtactctctcgcagctcgtccgtctcc
agcgtacattcacctaaggagcagcagagagccaataagattatgtcagtgtgggagcag
cgcaccaaccagctgcgtcaaaacaacttgagggccagctcagaggctctgttcaacgag
ctggacccagaggaacgcctgcgtgtctcctccgccctccacctgcgccccgatatgaag
acccacaacgaccgccccctagtggtggagccaggcaatggggacaaaccacgacccgac
aaggaggacagagatggagcagacccccagcaagagggaggagacccctacggcccacaa
ctccgcaagcaccaccgtcaccgggagaggaatggggagaacggggagagcaggcatcac
acccaccacagccgcagtagggaccactaccacccagacgggccccggcccaaagaacga
aaggtggagaggagccatagtcgagaggggggccagggccacaggcaccatcaccaggct
ggatccccggaagaaggggtgaacggagggggggaggagagggagcaccgccaccaccac
tcccacagacagccccgagagggaaacggggccctggctaacggggccagagtggagagg
aagggccggggtcacaaggaggggaacggagaggggaatggagagaggaggagataccgc
tcccgcatggtcagggcccagtcaactctggatggagaggagtgcagagagaatggaaag
agagatggagactgggaccagggacacagagcttcactggacgctcaaggggagagcctg
gccaccagccctgtgcagcctcctgcaggtctgcaggccggagagaagcaagaggatgca
gacaaccagaagaacagccacagagccagccaggcaggcctcaacagcaacactgtccac
atccctgtcaccatcactgccccgcccagagagactaccatcatacccagtcagtacccc
atgaataacatagactgtgagagcctccccctgaacgaggagaagaagaacttagaggag
gatgaggaggagctgaagaacggccccaaacacattctaccctacagctccatgtttgtg
ttcgggcagaccaacccggtgcgtcggctgtgccactacgtggtgaacctgcgctacttt
gagatgtgtatcctgtcggtcatcaccatgagcagcatagccctggctgctgaagaccct
gtgcaggccaatgcaccacgcaataacgtgctcaaatacctggactacgtcttcacagga
gtgttcacctttgagatggtgattaagatgatagacctgggactactcctccatcctggt
tcttacttccgcgacctgtggaacatcctggactttatcgtggtcagtggagctctggtg
gcgttcgcctgctcaggaactaaaggcaaggacatcaacaccatcaagtcactcagggtg
ctgcgagtcctgaggcccctgaagaccattaaacgactgcccaagctcaaggctgtgttt
gactgcgtggtcaactctctgaagaacgtgctcaacatcctcattgtctacatgctcttc
atgttcatcttcgctgtgatcgctgtgcagttgttcaagggcaagttcttctactgcacc
gatgagtctaaaagtctggagaaggactgcaggggtaagtttctggactatgaccgtgat
gacgtggctgcccaggatcgtgagtggagaaagtacgagttccattatgataacgtgctg
tgggccttcctcaccctcttcaccgtctccactggggagggctggccaatggtcctaaag
cattctgtggatgccacctatgaggaccagggccccagcccaggcttccgtatggagacc
tctatcttctatgtggtctactttgtggtctttcccttcttcttcgtcaacatcttcgtg
gctctcatcatcatcaccttccaggaacagggagacaaggcaatgtcagagtgtagtctg
gagaagaacgagcgagcttgtatcgactttgccatcaatgccaagcctctgacgcgctac
atgccagctgacaagcagtcgtttcagtataagatgtggaagtttgtggtgtcgccgccc
tttgagtactccatcatgaccatgatcgcactcaacactgtggtgctgatgatgaagttt
cacggtgctccggagctgtacgaggccatgctgaagtacctgaacatcgtgttcacagct
ctcttcacactggagtgcatcctgaagatcatcgcttttggaccactgaattacctgaag
gcagcctggaacgtgtttgactttgtgacagttttgggaagtatcacggacatcttggtc
acagagattaaggacaagctgatcaacctgagtttcctgaggcttttcagggcggccagg
ctcatcaagctattgaggcagggctataccatccgcatcctgctgtggacctttgtccag
tccttcaaggctctaccttacgtctgcctcctcatcgctatgctcttcttcatctatgcc
atcatcggcatgcaggtgtttggaaacattgagctgaatgaggaatcggccatcaaccac
cacaacaacttccagacattctttcaggctctgatgcttctgttcaggagtgcaacaggc
gaggcgtggcatgagatcatgctgtcgtgtctgagtaaccgtccgtgtgataaactgtca
gggtctggagggaaggaatgcggcagtgattttgcttacttctactttgtctccttcatc
ttcctctgctccttcctgatgctcaacctttttgtggcggtcatcatggacaactttgag
tacctaaccagagatgcctccatcctggggcctcaccacctggacgaatttatccgcgtc
tgggccgagtacgaccctgctgcctgtggccgtatgacctaccttgatatgcacgagatg
ctccgccacatgtcccctccactaggtgtgggaaagaaatgcccgcccagaatcgcctat
aagcgattggtcaaaatgaacatgcccatcgccgatgacaatacggtgcacttcacgtcc
acgctgatggctctcatccgcactgctctggagatcaaactggcatctggggtgctggct
cagcgcctgtgtgatgctgatctgaggaaggagatctccagagtctggcctaacctgcct
cagaagactgttgacctgctggtcacaccatataaaattgatgagttcaatgagctcata
tgcccctttgcggttgtaaaccgagagctgacagtggggaaggtctatgctgccctcatg
atctttgactactacaagcagaaccgggccaagaggctggaacagcaactgggactggac
ttcacagggacaattaagaataaaaagggtgcagccttcttccgccccatgatgcccatg
acccatatgcaggaggagacaccaatcaccactgccaagcccccgcccccctcacaacct
gaaccagagcctcagccagagcccccgcccgtcaccacctctctaaccaatggtgacaca
gtaccaagccctagaagtgccataaaagagtccatatcaggagatcagctgtctcaggag
ggccagcggtccagcactagcagtcggactgtacagcggggccagtcagaggacgtgccc
tactccatcaaacctcaggaaccagtggagatgaggcaggtgaagaacggtgctgattta
gagggctactttggtctggagggccatggcagagcagcctccatgcctagactggactcc
cagtactatcggaaccaccctcgccacctacctgggacctacctggcacctatcccagac
atcagtcctatcaggcggtcggcatccacgttggcttcccagcgcccccaggaggtgagt
ccgagggaccacaccctggagaggcctagccaagcccaggcccagtcatcctcagcccca
ggccaggcccaagacaggccctaccaccatcaccaccaccaccgctgtcacagacgcagg
gacaaggacagggacaagaagcagaagtcactcgacagggcatccagcgtgcagccttct
agtatagcaggtttgcctgctgatcctgccgtggagggcttgtccatggagcgggcgagg
gagcgtgaccgaggcaggcctcaggagaggaggcatcactctgctgccggggagaagcag
cgctactactcctgtgagcgctacggaggcagggagcactaccacaccaagtcagccgga
ccgagccgctccacctcccctggagagacccatgacctgggcctcttcaagcagagtatc
ggcatggctaaaggcagccaagtggtcttaacttcagcgttcagcacgccctgccgtggg
cgcagacagctcccccagacccccctcaccccccgccccgccgtggcctacaagaccgcc
aactcctcacctgtgcagtttggtgccacggggcacaagtccagtctcagccggggcctc
tcagagcatagcgccctgctggagtcacccgccatgcccgtcacccgcatcggctcagac
cccaacctgggcccccagtcgcggggtgcccctccacgcagcctccctgaggagcctgat
gacttccaggacgctgtgagcacccatggagggggaggtggatgctcccccaggacctct
gcctcagcttcccatggggctactgagccttcctctgcacctgccccacagggccgggct
ggggtcccaaacgggtaccacttcactctgggggtcaacgccggttcgagttccagcacc
agaggaactgggagcttccgggagaaggaagaggatgactggtgttag
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integrated database retrieval system
