Oncorhynchus tshawytscha (Chinook salmon): 112234605
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Entry
112234605 CDS
T05605
Name
(RefSeq) LIM domain only protein 7 isoform X1
KO
K06084
F-box protein 20
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
112234605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112234605
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
112234605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
LIM
PDZ_6
PDZ
PDZ_2
DUF6288
Motif
Other DBs
NCBI-GeneID:
112234605
NCBI-ProteinID:
XP_024258585
LinkDB
All DBs
Position
LG03:33324279..33445824
Genome browser
AA seq
1235 aa
AA seq
DB search
MAAESNKDSLHYRRSLVIAPKTTTQFNQFLPTKDKPAAYVPAPLRKKRAERHEDSRRSWA
SPKYTEEDGTFTRLLQKYDFASDGSKSMTDLVVDQETLKQVRYEELQKIREQVKENEDQW
QDDLTKWKNRRKSFNSDIVKKKEEREQTTASSGIGSRGFQNSNWSSIGSRLNSLASLDQD
VFEDSAPVLRTLPPRSYTFDNPYTPLDRLRPTSSSVLPPREEACAATTATNRAVSPSRGN
MSDSIDSPFGSGSDITTTVGRTSNYNPYVPAPNPSERAPSLASRYTSAAKTEETFSTTTT
PSLLPKAHEPSRPWVGKVSEEVTLSTGGGSLYIQQPQYNSVVMDPQPMPPGVSRVSASLP
RSYMRSDSARLNSVVMLRPFGSQSTSVASLPPAYTAPLMADSQKSVNGETDFTKKLSAPS
RYIQVMTSEDKAHSLSSSAHSSGEEKEEEEKRGVTPTLATTLVPTLAPSPVPSQARSPSP
ALQTPKVAYTAPVSPLPTKDTNQESYADMRISLNQRPNSSRDFGFQTEWDSTGAHVTSIQ
PGSPAELCQLQVGDEVMSVSGQRVAEMSYGKWKSSTEQALQQGSLTMDIRRHGRNNWDRD
LPSLPFKSHKTINLTSMDHHPTVIGFPDTTTINATTSLDFTSRGSMETTKKVTTQPIIDV
ASNGVNGGFRDETVTVRNKEPISMKNLKRRSEFFEQGGSESAKSDMPVASITPSSNRLSC
DPEEERRRQEKWQKEQERLLQEKYRRDQEKLEEEWRRAQQEAVTEGGRHHQEEPRGLEMD
SRSISALSPLRQPTMPWEDKEAQEEERGRRVEEEAQRRQEEEERRRVEEDRQKWEEGRRT
EEEEQELLRLQEERMRREKQEDEERRQREKEELRWQRRKEEERRRQEAAEQQHREKEKMQ
EQQQQWAKSKSTPELDDVEETKGWYGSSGGMAQRLLEEELRRKADKKAQSLRAASELELE
RRNILNAMRYREPERVTSSCGIGEGLGRKGQQSITQAELERQQILQEMKKKTNLATDNSW
IRQRSTSTTNSKDPTASPIRRGESLDNLDTAPRSSWRSSWTPGSTSSIHNYSRPHFALSG
LKTTSSYSGVAYGGGGYGSEVGSRPGLATLPSSLSMSSLREARGCNLSSWSLRSPSPSST
PSLGPEPESRPSSQQRSRSVSGKKVCTFCDTVLGKGAAMIIESLGLCYHLTCFKCIDCKS
DLGGSEAGAEVRIRNRQLYCNSCYMRFKTGQPTSM
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggagagtaacaaggattcgctgcactaccgccgctcgttggtcatcgcaccc
aaaacgaccacacagttcaaccagttcctgcccactaaggacaagccagcggcctacgtg
ccagcacctctccgcaagaagcgggccgagcgccacgaggacagccgccgaagctgggcc
agccccaagtacactgaggaggatggcaccttcaccagactgctccaaaagtatgacttt
gctagcgatgggagcaaatcaatgacagaccttgtggtggaccaggagaccctgaagcag
gtgcgctacgaggagctacagaagatcagagagcaggtcaaggagaacgaagaccagtgg
caggatgacctcaccaagtggaaaaaccgtcgtaagagcttcaactctgatattgtgaag
aagaaagaggagagggagcagaccacagctagcagcggaatagggagccgcggtttccag
aattccaattggagctccatcggcagtcgcctcaactccctcgcctctctggaccaggac
gtgtttgaagactccgccccggtcctccgcaccctccctccgaggagctacaccttcgac
aacccctacacccctcttgaccgcctcagacccactagctcctccgtgctccccccaagg
gaggaggcgtgcgctgccaccacggcaaccaacagggctgtctcgccttctaggggcaac
atgagtgacagtatcgacagtcccttcggttctggtagcgacatcactaccactgtgggt
cgcacctccaactacaacccctacgttccagccccgaatccttcagagagagccccaagc
ctggcctcacggtacaccagtgcagccaagacggaggagaccttcagcaccaccaccacc
cccagcctactacccaaagctcatgagcccagtcgcccatgggtggggaaggtgtctgaa
gaagtgaccctatccactggtggtggctctctgtacatacaacagccacagtacaactcg
gtggtgatggacccacagcccatgcctcctggtgtgtctcgggtttctgcctctctcccc
aggagctatatgagatcggacagcgctcggctcaactctgtcgtcatgctaaggcccttc
gggagccagtctacaagcgtcgcatcactgccacccgcctacaccgctcctctgatggct
gactctcagaaaagtgtgaacggagagacggatttcaccaagaagctgtcggcccccagc
cgctatatccaggtcatgacctctgaggataaggcgcactccctctccagctctgcccac
agcagtggagaagaaaaagaagaagaagaaaaaaggggtgtgacccccacacttgccaca
acacttgtccctaccctggccccttctcctgtcccttctcaggccaggagtccttcaccc
gccctccagaccccaaaagtggcctacacagccccagtcagtccgttacctacaaaagac
actaaccaggagagctatgctgacatgcggatcagtctcaaccagaggcccaacagcagt
cgagactttggcttccagacagagtgggactccactggagcacacgtcacctccatccaa
ccaggcagcccagccgagctgtgccaactgcaggtgggcgatgaggtgatgtcggtgagc
gggcaaagggtggcagagatgagctacggcaagtggaagagcagcacagagcaagctctg
cagcagggaagccttacaatggacatacgccgtcacggcaggaacaactgggacagagac
ctaccttccctgccgtttaaaagccataagaccatcaatctgaccagtatggatcatcat
ccaacagttataggtttccccgacacaaccaccattaacgcaaccaccagcttggatttc
acctctcggggatccatggaaaccaccaagaaggtcactacccaaccaatcattgatgta
gcatccaatggagtgaatggaggcttccgtgatgagacagtgaccgtgagaaacaaagaa
cccatatccatgaaaaatttaaaacggaggtcagagttttttgaacaaggaggatcagag
tcagcaaaatcagatatgcccgttgcctccatcactccctcctctaaccgcttgtcctgt
gacccggaggaggagcgcaggaggcaggagaaatggcagaaggagcaggagagactccta
caggagaaataccgtcgtgaccaggagaaactggaggaggagtggcgtcgggcccagcag
gaggctgtgacagaagggggaagacaccaccaagaggagccgaggggcctggagatggac
agcaggagtatcagtgccctctcccccctccgccagcctaccatgccctgggaggacaag
gaagcccaagaggaggaaagggggaggagggtagaggaggaagcacagagaagacaggag
gaggaagagaggaggagagtggaggaggatcggcaaaagtgggaggaggggaggaggacg
gaggaggaggagcaagagctgctgcgtcttcaggaggagaggatgaggagggagaagcag
gaggatgaggagaggagacagagggaaaaggaggagctgagatggcagaggagaaaggag
gaggagaggaggcgccaggaggctgctgaacaacaacacagggagaaagagaaaatgcag
gagcagcagcagcaatgggcaaagtcgaaatctactccagagctggacgacgtggaggaa
actaaaggctggtacggcagctcggggggcatggcccagaggttactggaggaggagttg
agacgtaaagcagacaaaaaggcccagagtctccgggctgcgtcagaactggagttggag
aggagaaacatcctaaacgccatgagatacagagagccagaaagagtgactagcagctgt
gggataggcgaaggattggggaggaagggccagcagagcataacccaggcggagctggag
aggcagcagatcctgcaggagatgaagaagaagaccaacctggccacagacaacagctgg
atccgccaacgctccaccagcaccaccaacagcaaggaccccactgccagccccatcagg
agaggcgagtctctggacaacctggacaccgcgccccgttcttcctggcgctcgtcatgg
acaccgggaagcacctcgtccatccacaactacagccggcctcattttgccctttctggc
ctcaaaactacatcctcctatagtggtgttgcctacggtggtggcggctatggcagcgag
gtcggaagtcgtcctggcttagccaccctgccctcctccctctccatgagctccctcaga
gaggccagggggtgtaacctatcttcctggtccctgcgctcaccctcgccatcctccacc
ccttctcttggccccgaacccgagtcacgcccatcctcacagcaacgcagcaggtcagtg
agtggaaagaaagtctgtacgttctgtgatacggtgctgggcaagggagccgccatgatc
atcgagtccctgggactctgctatcatttgacctgtttcaagtgtatcgactgtaagtct
gacctaggaggatcggaggccggagctgaggtcagaatacgtaaccgacagctctactgt
aactcctgctacatgcgattcaaaactggacagccaacgtccatgtga
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integrated database retrieval system
