Oncorhynchus tshawytscha (Chinook salmon): 112234629
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Entry
112234629 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: transcription activator BRG1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112234629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112234629
03036 Chromosome and associated proteins [BR:
otw03036
]
112234629
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112234629
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
112234629
Chromatin remodeling factors
BAF complex
112234629
PBAF complex
112234629
GBAF(ncBAF) complex
112234629
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
112234629
NCBI-ProteinID:
XP_042183564
LinkDB
All DBs
Position
LG09:81033023..81049826
Genome browser
AA seq
1633 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGAMRGPSPSPGSAHSMMGPSPGPPASGHSHPQQGPS
GYPQENMHQMHKPMEGMHEKGMSDDPRYGPMKSMGMRPGGGHIGMGPPPSPMDQHSQGYP
SPLGGSEHSPSPVPANGPPAGPMMPSGPGVPMEGGDPQSMGQQNRVGVPGPSGGSGPGGV
GPGGPTPFNQNQLHQLRAQIMAYKMLARSQPLPDHLQMAVQGKRPMPGMQQQPGMPNMPP
SSGPGAGPGQPPANYNRPHGMLGPNMPPPGPSGVPPGMQGQPTNGPPKQWPEGPMVNAAA
PSSAPQKLIPPQPTGRPSPAPPLCPLLPPRXCPQTQSPGQPLQPPPMVLHQKQNRITPIQ
KPRGLDPVEILQEREYRLQARITHRIQELEHLPGSLAGDLRTKANIELKALRLLNFQRQL
RQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL
NSILQHAKDFKEYHRSITAKLQKATKAVATYHANTEREQKKENERIEKERMRRLMAEDEE
GYRKLIDQKKDKRLAYLLQQTDEYVANLTDLVRAHKADQALKDKKKKKKKKKKKKPESGE
GQPPALGPDGEPLDETSQMSDLPVKVIHVDSGKILTGLDAPRAGQLDTWLEMNPGYEVAP
RSDSEDSGSEEEEEEEEEPQPSQAPTEEKKKIPDPDTEDVSEVDARYIIEGAKQDVDDEY
NSAEAAFARGLQSYYAVAHAVTETVDKQSTLLVNGQLKHYQIKGLEWLVSLYNNNLNGIL
ADEMGLGKTIQTIGLITYLMEHKRINGPFLIIVPLSTLSNWVYEFDKWAPTVVKVSYKGS
PQARRAFLPILRSGKFNVLLTTYEYIIKDKQVLAKLRWKYMIVDEGHRMKNHHCKLTVVL
NTHYLAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCTTFEQWFNAPFAMTGEKVDLN
EEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQRVLYRHMQAKGVL
LTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQQIEESFSEHLGFTGGVVSGPDLYR
AAGKFELLDRILPKLMVTDHKVLLFCQMTSTMTIMEDYFGWRNFKYLRLDGTTKAEDRGM
LLKTFNDPASQYFVFLLSTRAGGLGLNLQSADTVVIFDSDWNPHQDLQAQDRAHRIGQRN
EVRVLRLCTVQSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQD
EVGAPGGWRAGGALEEDEVPDDETVNQMIARSEEEFDQFMRMDLDRRREDARNPKRKPRL
MEDDELPTWILKDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQWLKAIEDGNL
EDLEEEVRHKKTTRKRKRDRDDMPGSATPSSSGGRSRDKDEEVKKAKKRGRPPAEKLSPN
PPSLTKKMKKVVDTVIKYKDGSNGRQLSEVFIQLPSRKELPEYYELIRKPVDFRKIKERI
RSHKYRSLNDLEKDVMLLCSNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEKEEESEG
EESEEEEEEVDEGSESESRSVKVKIKLGRKEKEGRGKGQRRRGRGSRAKPVVSDDDSEEE
QEEAGSVSGSEED
NT seq
4902 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccagacccccccatgggagggacgcctcggccgggcccctccccaggaccg
gggccttctccaggagccatgaggggacccagcccttccccgggctctgctcatagcatg
atgggacccagcccaggtcccccagcctctggacactcccacccacaacaggggccctca
ggatatcctcaggagaatatgcatcagatgcacaaacctatggaaggcatgcatgagaag
ggcatgtctgatgaccctcgctatggaccaatgaagagcatgggcatgagaccaggtgga
ggccacattggaatgggaccccctcctagccccatggatcaacattcacaaggctacccc
tctccactggggggatctgagcactctcccagccctgtgccagccaacggccctcccgct
ggccccatgatgccctctggcccaggtgtccccatggagggcggtgacccccagtccatg
ggccagcagaaccgtgttggggtcccaggtccaagtggtggttctgggccaggcggggtt
gggcctggtggacccacccccttcaatcaaaaccagctacaccagctcagggcccagatc
atggcctacaagatgctggctcgcagccagcccctaccagaccacctgcagatggctgtg
cagggtaagaggcccatgccagggatgcagcagcagccagggatgcccaacatgccccct
tcctctgggcctggagcggggcctggacagccaccagcaaactataaccgacctcatgga
atgttaggcccaaacatgcctcctccaggaccctcaggtgttcctcctggtatgcagggc
cagcccaccaatggcccccctaaacaatggcccgaagggcccatggtgaatgctgctgct
ccatccagtgccccccagaagctgattccccctcagcccactggcagaccctcccctgct
ccccctctgtgccccctgctgcctccccggtaatgcccccagacccagtcccctgggcaa
cccctccagcccccacccatggtgctgcaccagaaacagaaccgcatcacgcccatccag
aagccccgtgggttggacccagtagagatcctccaggagagagagtacaggctgcaggct
cgtatcacccaccgtatccaggagctggagcatctaccagggtctctggccggagacctg
cgcaccaaagccaacatcgagctcaaggccctgaggctgctaaatttccagagacagctg
cgtcaggaggtagtggtgtgtatgcgtcgtgacacggccctggagacggccctcaacgct
aaggcctacaagcgcagcaagcggcaatccctccgcgaggcccgcatcacagagaaactg
gagaagcaacagaagattgaacaggagcgcaaacgacgccagaaacaccaggaatacctt
aacagcatcctgcagcatgctaaagacttcaaggagtaccaccgctctatcacagccaag
ctccagaaggccaccaaagctgtggccacgtaccatgccaacactgagcgtgagcagaag
aaggagaacgagcgcattgagaaggagagaatgaggaggctaatggctgaagatgaagag
ggctaccgtaagctgattgaccagaagaaagacaagcgcctggcctacctgctgcagcag
acagacgagtacgtggccaacctcaccgatctggtcagagcccacaaggctgatcaggcc
ctcaaggataagaagaagaagaaaaagaagaagaagaagaagaagccagagagtggggag
ggccagcctcctgccctgggacccgacggagagcctctggatgagaccagtcagatgagt
gacctgcctgtgaaggtgatccatgtagatagtgggaagatcctgacggggctggatgcg
ccccgggctggccagctggacacctggctggagatgaaccctgggtatgaagtggctcct
cgttcagacagcgaggacagtggctcagaggaagaggaggaggaagaggaggagccccag
ccctcccaggctcccactgaggagaaaaagaaaatcccagaccccgacacagaggacgtg
tccgaggtcgacgcccgctacatcatcgagggagccaagcaggatgttgatgatgagtat
aacagtgccgaggcggcgttcgcccgaggcctgcagtcttactatgctgtggcccacgcc
gtcactgagacggtggacaaacagtccacgctgctggtcaacgggcagctcaaacattac
cagatcaagggcttggagtggctggtgtctctgtacaacaacaacctgaatgggatcctg
gctgatgagatgggtctgggcaagaccatccagaccatcggcctcatcacctacctcatg
gagcacaagcgcatcaacggtcccttcctcatcatcgtgcccctctcaactctgtccaac
tgggtgtatgagtttgataagtgggctccaacggtggtgaaagtctcttacaaaggctcc
ccacaggctcgccgggcattcctccccatcctgcgcagcggcaagttcaatgtactgctc
accacctacgagtacatcatcaaagacaagcaagtgctggctaagctgcgatggaagtac
atgatagtggacgagggccaccgtatgaaaaaccaccactgtaagctgactgtggttttg
aacacccactacctggccccgcggcgtctgctgctgaccggcaccccgctgcagaacaag
ctgccggagctctgggccctgctcaacttcctgctgccgaccatcttcaagtcctgcaca
accttcgagcagtggttcaacgcccccttcgccatgaccggagagaaggtggatctgaac
gaggaagagaccatcctgattatccgtcgtttgcacaaagtgctccgccccttcctgctg
cgcagactgaaaaaggaagtggagtcccagctgcctgagaaggtggagtatgtgatcaag
tgtgacatgtcagccctgcagagagtgctgtacagacacatgcaggctaagggtgtgttg
ctcaccgacggctctgagaaagacaagaagggtaaaggaggcaccaagaccctgatgaac
accatcatgcagctgaggaagatctgtaaccatccctacatgttccagcagatcgaggag
tccttctctgagcatttgggattcactggaggcgtagtgtctggacctgacctgtaccgc
gccgctgggaagtttgagctgctagaccgtatcctgcccaagctgatggtcactgaccac
aaggtcctgctcttctgtcagatgacttccaccatgaccatcatggaggactactttggc
tggcgcaactttaagtacctgcgtctggacggaaccaccaaggctgaggatcgtgggatg
cttttgaagaccttcaatgaccccgcctctcagtactttgtgttcctgctcagcaccagg
gccggcgggctgggcctcaaccttcagtctgctgacactgtggtcatctttgactccgac
tggaacccacatcaggatctgcaggcccaggacagagcccaccgtatcgggcagcggaac
gaggtgcgtgtgttgcgtctctgcaccgttcaaagtgtggaggagaagatcctggcggcg
gccaagtacaagctgaacgtggaccagaaggtcatccaggccggcatgttcgaccagaag
tcgtcgagtcacgagcgccgtgccttcctgcaggccatcctggagcatgaggaacaggac
gaggtcggggccccggggggctggcgcgctgggggggcgttggaggaggacgaggtgcct
gatgatgagaccgtcaaccagatgattgccagaagcgaggaggagtttgaccagttcatg
cgtatggacctggaccggcgccgcgaggacgcccgcaaccccaagagaaagccccgtctg
atggaggatgacgagctgcccacctggatcctaaaggatgatgccgaggtggagaggctc
acctgtgaggaggaggaggagaagatgtttggtcgcggctctcgccagcgcaaggaggtg
gactacagcgactcactcacagagaagcagtggctcaaggccatagaggacggtaatctg
gaggacctcgaggaggaggtgcgtcacaagaagacgacccggaagcgcaagcgagaccgt
gatgacatgcccggctcggccacgcccagctccagcggtggtcgcagccgtgacaaggat
gaggaggtaaagaaggccaagaaacgtgggcgccctccagctgaaaaactgtcccctaac
cccccatccctcaccaagaagatgaagaaggtggtggacactgtcatcaagtacaaggac
ggcagcaatgggcgccagctgagtgaagtcttcatccagctgccctcgcgcaaggagttg
cctgagtactacgagctcatccgcaaacctgtcgacttcaggaagattaaggagaggatc
cgcagccataagtaccgcagcctgaatgacctggagaaggatgtgatgctgctgtgtagt
aacgctcagaccttcaacctggagggctctctgatctatgaggactccatcgtacttcag
tcagtcttcaccagcgtccggcagaagattgaaaaggagaaggaggaggagagtgaggga
gaggagagtgaggaagaagaggaggaggtggacgaaggctctgagtctgaatctcgttca
gtgaaggtgaagattaaactggggaggaaggagaaggagggcagagggaagggccagcgc
cggagaggccgtggctcccgggccaaacctgtggtgagcgacgacgacagcgaggaggag
caggaggaggcgggttcggtcagcggcagtgaggaggactga
DBGET
integrated database retrieval system
