Oncorhynchus tshawytscha (Chinook salmon): 112234633
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Entry
112234633 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: nucleosome-remodeling factor subunit BPTF-like
KO
K11728
nucleosome-remodeling factor subunit BPTF
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112234633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112234633
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
NuRF complex
112234633
NuRF complex (fruit fly)
112234633
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
PHD
DDT
WSD
PHD_5
WHIM1
Motif
Other DBs
NCBI-GeneID:
112234633
NCBI-ProteinID:
XP_042163038
LinkDB
All DBs
Position
LG27:15611991..15635956
Genome browser
AA seq
2723 aa
AA seq
DB search
HCPRSPIFEEKEIPPLELPRTSEDLLVPSEELLNVSSIYEVLRNFSTVLRLSPFRFEDFC
AALVGQEQCTLMAETHTALLKAILREEDTSNTTFGPADLKDSVNSTLYFIDGMTWPEVVR
AYCESDQEYHHVLPYQEVEDYPYGPLDSKIKVLQFLVDQFLTTNIAREELMSEGVVQYDD
HCRVCHRLGDLLCCETCSAVYHLECVKPPLVEVPEDEWQCEICVAHKVPGVTDCVTEMQK
SKPYIRQEPIGYDRHRRQYWFLNRRIIVEEDGEHDKKKIWYYSTKVQLGELIECLDKEYW
ENDLCAVLEEMREEVHTHMDITEDLTNKAAGNNKAFLVAANDEILERVQGRQERRAVEQA
EKATTDTTKIEEETPTHCSQLPDHRGLQDPEYKEEASSQAAVAPPAGEENTTVHPPKPGS
STQDGTLPKHEPLKPAEVSCSAASESGEASMEPEQERQDDKPVDSESHGEEDPSAQCQPT
PPPHPGDENSNSSHVSAPGVLRRPEEPNLADRSSQSSITSQDDTGEGKESGNGEGSASGQ
TNNRIVTRLRNPDSKLSQQKTQGDGSPTPRDSKETSPPSSESEVARLGTVRKDLTVKGNL
NNFFKLGQEGKFRVYHNQFSTNTLGLNKHQHREDHDKRRHLSHKFSLTPAGDFKWNGSIH
GSKVLTISTLRLTIIQLETNVPAPFLHPNWASHRTNWIKAVQMCSKAREFALALAIMECA
IKPVVMLPVWKDALGHTRLHRMTSMEREEKEKGKKREKKLEDEETMQQATWVKYTIPIKH
QVWKQKGRSTELPGNTNVNYRKVLEAAKTGKENATSCPNKRKCLPKAPTSSETQAKEEST
PITEEKDQEETSTMEPSGNTSPGEGQTLKEKEEKNITEKVEKKDDQVEEKTEDKMDVDPS
PPDTCLSEEKGIVDSKCPSSLTDPAVKEEPGEEEETKQEDSEAKPPVRPFNWDVVNVSEG
FQLRTAYKKKVKTSKLDGLLERRVKQFTLEEKQRLERLKQQSALAKHTVSKEKVNTGTPT
TIKASTADKLAMTPCTSLKAEGQADSVVKDTIVKRLDFDQEQPVKFQPSGETDNLDVRLG
STCKPQAAGATGPNLNTTGLANHESSVQGNGGDALSQTELNGGSQKSIDVNNKVNLTSVE
PALGAAKPPRAEVMIAGENGRKHGYEETEQVDTKVMLQMLEGEIKTLPVKEPVKSIMNGT
LFQDGLKVNNTVLATSLALEDVERKVVVSEPDYSVTSSMLGPPTGVPMVSNSTKSEPMEI
GQTASNEITPFPIPTAEESSLSNNTTENSSSSTEVLKTITQVTTTTTTTMSTESRTVQIA
KVFSSTKPAVTPAAESSAVSTLTTMTKTTVTRVCSPTLGATVSEETKTVVTAMLTDAKSG
PSGSSVTSMTVSKEYSTRDCVRLLKFSRSKKTRSGTALPSYRKFVTKSSKKSIFVLPNDD
LKKLARRGGIREVPIFNYNAKPALDIWPYPSPRPTFGITWRYRLQTVKSLAGVSLMLRLL
WACLRWDDMAVKPSPAVGTTRTESSETAITTTEIIKRRDVGPHGIRSEYCIRKIICPIGV
TEAPKETPTPQRKGLRSSALRPKKPEPAKQTGPIILETWVAEEELEIWEIRAFSERVERE
KAQAADQAKKRLEQQKPGATTSTPTSTPTTSASGTPASLTSQVTPGTKLVLASKLGTPVT
FQQNKNFHQSFTSWVKQGQGSPGMVQVQQNLLGIIPSSTPGNQRTYSSFQNRNATINIRP
NTSTSTTTQPVISTEAQIRPGMTVIRSPLQQGTTMGKTIIRTPLMMQQGILPASQQQVVT
QIIRGQPVSTAVSSASPVQTSAGQRMLGAAPSPSCHPCPGQSPSPSTPQGSRPQQGQVKL
TLAQLTQLTQGAQGGNQGLTVVIQGQGQTTGQLQVIPQGVTVIPGPGQQLMQAAMPNGQV
QRFLFTPGATAPVPNPATTASAAVTPVTATTTTPSGPALSQPPVQTPVTSQAPAPPVQPP
QQAIARVQPPQQAIARVQPPQQAIARVQPPQQAIARVQPPQQAIARVQPLNRLSLVSSPL
NRLSLVSSPLNRLSLVSSPLNRLSLVSSPLNRLSLQSSLLNRLSLQSSLLNRLSLQSSPC
PRSCPPPVSTYQTQPPQAQVHIPLQSPTALPIQQIAQIPTSPQPVHMKTLSVSPSVTQAT
VRPIQAHAQLQPQVTAQIRPQQQLQLHHQPQLITVPGLQQQVQVLGTIQTHVAAQLQAQQ
GGAVPQQIKLQLPIQIQQAGGQVQAHQIQNVVTIQTASMQDHLQRIQQLREQQQKKKQQE
AKREQSLQASSPSDIIQKQVVMKQNAVIENLKQRKTMTPAEREENQRIIVCNQVMKFILD
KIDKDEKQAAKKRKKEESVEQKRSKQNATKLSALLFKHKEQLKAEILKKRALLDKELQLE
VQEELRRDISRLRKEKEKAQAAASQAAAAAAQVASSLSPTMASPSSAHKRKRDDERDSSS
AKPKKKKMISTTSKDHKKEVKLYCVCKTPYDEAKFYIGCDLCSNWFHGACVGITEKEAKK
MDDYVCNGCKQGQDSQDSEGTTEELYCICRTPYDETQFYIGCDRCQNWYHGRCVGILQSE
ATHIDEYVCPQCQSTEDAMTVLTPLTDKDYEGLRRILRSLQAHKMAWPFLEPVDPNDAPD
YYGVIKEPMDLSTMEDKLQKRYYNKLTEFVADMTKVFDNCRYYNPNDSPFFQCAEVLESF
FVQKLKGFKASRSHNNKLQTSTS
NT seq
8172 nt
NT seq
+upstream
nt +downstream
nt
cactgccctcgctcgcccatctttgaggaaaaggagatccctcctctggagctgcccaga
acctctgaggacctcctggtgcccagcgaggaactgctcaacgtgtcctccatctacgag
gtcctgcgcaacttcagcacggtgctgcggctctctcccttccgctttgaggacttctgt
gctgcgctggtaggccaggagcagtgcacgctgatggcagagacccacacagccctgctg
aaggccatcctgcgtgaggaggacacctccaacaccacgttcggtcctgctgacctcaag
gacagtgtcaactccaccctctacttcattgatggtatgacgtggcccgaggtggtccgt
gcctactgcgagagcgaccaggagtaccaccatgtcctgccctaccaggaggtggaggac
tacccctacggccctctggacagtaagatcaaggtgctgcagttcttggtggatcagttc
ctcaccaccaacatcgcccgtgaggagttaatgtcagagggggtggtgcagtatgatgac
cactgcagggtgtgccacagattgggggacctgctgtgctgtgagacctgctctgccgtc
taccacctggagtgtgtgaagcctcctctggtagaggtgccggaggacgaatggcagtgt
gagatctgcgtggcacacaaggtgcccggggtcacagactgtgtgacagagatgcagaag
agcaaaccctacatccgccaggagcccatcggctatgaccgccaccggaggcaatactgg
ttcctaaaccgaagaataattgttgaggaagacggggagcatgataagaagaagatctgg
tactacagcacaaaggtccagctgggagagctgatagagtgtctagacaaggagtactgg
gaaaacgacctgtgtgccgtcctcgaggagatgagagaggaggtgcacactcacatggac
atcactgaggacctcaccaacaaggccgcgggcaacaacaaggccttcctcgtggcagcc
aacgatgagatcctggagcgtgtgcagggcaggcaggaacggcgagcagtggagcaggca
gagaaggccactacagacaccaccaagatcgaggaagagacccccacacactgctctcaa
ctaccagaccacagagggctccaagaccccgagtataaagaggaggcaagctcacaagca
gctgtagctccccctgctggagaagagaacaccaccgtccacccccctaagcctggctcg
tccacccaggacggcactctccctaagcatgaaccccttaagcctgctgaggtgtcctgc
tctgccgcctctgaaagtggggaggcctccatggagcctgagcaggagaggcaagatgat
aagcctgtagactcagagtcccatggagaggaggacccctctgcacagtgccagcctact
ccaccaccacaccctggagacgagaacagcaacagcagccacgtctcagcgcctggggtc
ctcaggaggcctgaagagccaaacctcgctgacaggtcctctcagtcctccatcaccagc
caggacgacacgggtgaaggcaaggagagtgggaatggtgaggggtcagcgtctggacag
actaacaatcgcatagtgactcgtctgcgtaacccggacagcaagctgagccagcagaag
acccagggagatggcagccctacacccagggacagcaaggagacatctcctcccagctct
gagagtgaagtggctcgtctgggtactgtgaggaaagacttgacggtgaagggcaacctg
aacaacttcttcaagctgggccaggagggaaagttccgagtctaccacaaccagttcagc
accaacacactgggcctcaacaagcaccagcatcgtgaggaccacgacaagcgccgccac
ctctcccataagttcagcctaacccccgccggggatttcaagtggaacggctccatccac
ggatccaaggtgctgaccatctccaccctgcggctcaccatcatccagctggagaccaat
gtccccgcccccttcctgcacccaaactgggcctcgcacaggacaaactggattaaagcg
gtgcagatgtgcagtaaggctcgggagtttgccttggcgctggccatcatggagtgtgcc
atcaaaccagtggtcatgctgcctgtctggaaagatgcgcttggacacactaggctccat
cgcatgacctccatggagcgggaggagaaagagaaggggaaaaagagagagaaaaaactg
gaggatgaagagactatgcagcaggccacctgggtgaagtacaccatccccatcaaacac
caggtgtggaagcagaaggggaggagtacagagctaccagggaacaccaacgtcaactac
cgcaaagtactcgaagcagctaaaactggcaaagaaaatgcaacatcctgcccgaacaaa
cgaaaatgtttgcccaaagcaccaacgagctcggaaacccaggcgaaagaagagtctact
ccaattactgaagaaaaagaccaggaggaaacctccaccatggagccatctgggaacact
tcaccaggagaggggcagactctgaaagagaaggaagagaaaaatatcacagagaaggtg
gagaagaaagatgatcaggtggaggagaagactgaggacaagatggatgttgaccccagt
ccaccagacacctgtctcagtgaggaaaaaggtatagtggacagcaaatgcccctcatca
ctgactgaccctgctgtgaaggaggagcccggggaggaagaagaaactaagcaggaggac
tctgaggccaagccacctgtccgtcccttcaactgggatgtggtgaacgtcagcgagggc
ttccagctccgtacggcctacaagaagaaggtgaagacgtccaagctcgacgggctgctg
gagcgcagagtgaaacagttcaccctggaggagaagcagaggctagagcgcctcaaacag
cagtcagccctggccaaacacacagtctccaaggagaaagttaacacagggactcccacc
accatcaaggcttctacagcagacaagttagcaatgacaccgtgcacaagtctgaaagct
gagggacaagcagactcagtagttaaagacacaattgttaaaaggcttgactttgaccag
gagcagccagtgaaattccagccctcaggagagacagataatctggatgtcagattaggc
tccacctgtaaaccccaggcagcaggagccacaggccccaacctcaacaccacagggttg
gccaaccatgagagcagcgttcagggcaatggtggggatgcgttatctcaaacagagctg
aatggaggctcccagaaaagcatagacgtcaacaacaaagtcaatttgacatctgtagaa
ccggctttaggtgcggccaaacctcccagagcagaagtgatgatagcaggagaaaacggt
aggaagcatggttatgaggagacagagcaagtggacaccaaggtcatgctccagatgtta
gagggtgagatcaaaacactgccagtgaaggaacctgtaaaatccattatgaacggtact
ctctttcaggacgggttaaaggtcaacaacactgtgttagccaccagcctagccttggag
gacgtagagagaaaggttgtggtgtccgagcctgactactccgtcacgtcgtcaatgtta
gggccgcccactggtgttcccatggtaagcaacagcaccaagtctgagccaatggagatt
gggcaaacggcatccaatgagatcaccccatttcctatccccactgcagaggagtccagc
ttgagtaacaacaccacagagaacagcagtagcagtactgaggtgctgaagaccatcacc
caagttaccacaaccactactaccaccatgtcaacagagtctcgcacggtgcagatagcc
aaggtcttcagcagcactaagcctgcagtgacgcctgctgcagagagcagtgctgtatcc
accctcaccaccatgaccaagaccaccgtcaccagggtctgctccccgacgctcggggcc
actgtctccgaggagaccaagactgttgtcactgcaatgttgacagatgccaaatctggc
ccctcaggctcttcagtcacctccatgacggtcagtaaggagtactccaccagagactgt
gtccggctgctaaagttctcccgctccaagaagacccgctctggcacggccctcccctct
taccgcaagtttgtcaccaagagtagcaagaagagcatctttgtactgcctaatgatgac
ctaaagaagctggcgaggagagggggcatcagagaggtacccatcttcaactacaacgcc
aagccagccctggacatctggccctatccctcccccagacccacctttggaatcacgtgg
agataccgtctccagactgtgaagtctctggcgggggtcagtctgatgttgcggctgctc
tgggcctgcctgaggtgggatgacatggctgtcaagccctcccctgctgtaggaaccacc
cgcacagaatcctcggagacggcgatcaccacaacagagatcatcaagcggcgagatgtg
gggccgcacggcattcggtctgaatactgcatcaggaagatcatctgcccaattggcgtt
accgaagctcccaaagaaactcccactccccagaggaaaggcctgcgctccagcgctctg
aggccaaagaagcctgaaccggccaagcagactggacccatcatcttagaaacgtgggtg
gccgaggaggagctggagatctgggagatcagagccttttcagaaagggtagagagggag
aaggcccaggctgcagaccaggctaagaaacggttggagcaacagaagcctggtgccacc
acctccacccccaccagcacccctacaacctcagcttctggcactccggcatccctgacc
agccaggtcaccccggggactaaactggtcctggcctccaagctggggacacctgtcaca
ttccagcagaacaagaacttccatcaatcatttacttcctgggtcaagcagggccagggt
agtccaggtatggtgcaagtccagcagaatctcctgggcattattccatccagtacccca
ggcaaccagcggacctactcctcattccagaaccgcaacgccaccatcaacatcagaccc
aacacctccacctcaaccaccactcagccggtcatttccaccgaagcccaaatccgtccg
ggcatgacggtgatccgatcgcccctgcagcagggcaccaccatgggcaaaaccatcatc
agaacccccttgatgatgcaacaaggtattctaccagccagccagcagcaggtggtgact
cagatcatccggggccaacctgtctccacagcagtttccagtgccagccctgtgcagacc
agtgcaggccagaggatgctgggtgccgccccgtccccgtcctgtcacccctgccccggg
cagtccccatcaccatccaccccccaaggcagccgaccacagcagggccaggtcaaactc
accctggcccagctcacccagctaacgcagggggcacagggagggaaccagggtctcaca
gtagtaatccagggacagggacagaccacaggccagctgcaggtcatcccccagggggtg
acagtcatcccaggccctgggcaacagctcatgcaggctgccatgcccaacggccaggtg
cagcgcttcctcttcaccccaggggcaacagcccctgtccccaaccccgccaccacggcc
agtgctgctgtcacccccgtcacagccaccacaacaacaccctcagggccagcgctgtct
cagcctccagttcagactcccgtcacctctcaagcaccggcaccaccagtccagccccct
caacaggctatcgctcgtgtccagccccctcaacaggctatcgctcgtgtccagccccct
caacaggctatcgctcgtgtccagccccctcaacaggctatcgctcgtgtccagccccct
caacaggctatcgctcgtgtccagcccctcaacaggctatcgctcgtgtccagccccctc
aacaggctatcgctcgtgtccagccccctcaacaggctatcgctcgtgtcgagccccctc
aacaggctatcgctcgtgtcgagccccctcaacaggctatcgctccagtccagcctcctc
aacaggctatcgctccagtccagcctcctcaacaggctatcactccagtccagcccctgc
cctcgttcctgcccccctccagtgtccacatatcagactcaaccccctcaggctcaagtc
cacatccccctccagtcccccactgccttacccatccagcagatagcccagatcccaacc
tctccacaaccggtccatatgaagactctctcggtctccccctccgtcacccaggccaca
gtgaggcccatccaggcccatgctcaactccagccccaggttacggctcagatcaggccc
cagcagcagctgcagctccaccaccaaccccagctgatcacagtgccggggctgcagcag
caggtccaggtgctgggcaccatccagacccacgtggcggcccagctccaggcccagcag
ggtggggcggtgccccagcagatcaagctgcagctgcctattcagatccagcaggcagga
ggccaggtgcaggcccaccagattcagaatgtggtgaccatccagacagccagcatgcag
gaccacctgcagaggatccagcagctcagagagcagcagcagaagaagaagcagcaggag
gccaaaagggagcagagcctgcaggcctccagccccagcgacattatccagaaacaggtg
gtgatgaagcagaatgctgtgatagaaaatctgaaacagaggaagaccatgactccagca
gagcgggaggagaaccagagaataatcgtctgcaaccaggtgatgaagttcatcctggac
aagatcgacaaggacgagaagcaggcggctaagaagaggaagaaggaggagtctgtggag
cagaaacgcagcaagcagaatgccaccaagctctcggctctgctcttcaagcacaaagag
cagctcaaggctgagatcctgaagaagagggctctactggacaaggagctgcagctggag
gttcaggaggagctgaggagggacatcagcaggctgaggaaggagaaggagaaggcccaa
gctgcagcctctcaggcagccgctgccgcagcccaggtagcctcatccctctcccccacc
atggcctcgccctcctccgcccacaaacgcaagagggacgacgaaagggactcatcctcc
gccaagcctaagaagaagaagatgatatccactacctcaaaggatcacaagaaggaagtc
aagctgtactgtgtctgtaaaacgccctatgacgaggccaagttctacattgggtgcgac
ctgtgctccaactggttccacggtgcgtgtgtgggcatcacggagaaggaggccaagaag
atggacgactacgtctgtaatggctgcaagcagggccaggactcacaggactcagagggc
accacggaggagctgtactgcatctgccggacgccatatgatgaaacacagttttacatt
ggctgcgaccgttgtcagaactggtaccacgggcgctgtgtgggcattctgcagagtgag
gccacccacatagacgagtatgtgtgcccgcagtgtcaatccacggaggacgccatgacc
gtcctcacaccgttaaccgacaaggactacgagggtttaagaagaatcctgcgctcctta
caggctcacaaaatggcgtggccgttccttgaaccagtagatcccaacgatgctcctgat
tattatggcgttataaaggaaccgatggacctctccacaatggaagacaaattacagaaa
cggtattacaacaagctcactgagtttgtggcggacatgaccaaagtctttgacaactgc
cgctactacaaccccaacgactcccccttctttcagtgtgccgaagttctggagtcattc
tttgtacagaagctcaaaggtttcaaagctagcaggtctcataacaacaaactacagact
tcgacctcttag
DBGET
integrated database retrieval system
