Oncorhynchus tshawytscha (Chinook salmon): 112234733
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Entry
112234733 CDS
T05605
Name
(RefSeq) pre-mRNA-processing-splicing factor 8-like
KO
K12856
pre-mRNA-processing factor 8
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112234733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112234733
Spliceosome [BR:
otw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112234733
Complex C
U5 SnRNP specific factors
112234733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
112234733
NCBI-ProteinID:
XP_024258782
LinkDB
All DBs
Position
LG13:63096609..63118663
Genome browser
AA seq
2338 aa
AA seq
DB search
MAAAFPYRGVPGGMPPGIHPPAQVPDYMSEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGAMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDAEEDSSVAEWLYEHQPLKDANKYVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDYNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPEDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETMEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
ATESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSGYGNWFPGGKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTSHAKIMADNPAWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLSNPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYG
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgccttcccatatagaggggtaccaggtggaatgcccccaggtatccatccc
ccagcccaggttccagactacatgtctgaggaaaaactgcaagagaaagccagaaaatgg
cagcagttgcaggcaaagcgctactctgagaagaggaagtttgggtttgttgacgcccag
aaggaggacatgccacctgagcacgtccgtaagatcatcagggaccacggtgacatgacc
aacaggaaattccgtcacgacaagagggtatacctgggagctctgaagtacatgccccac
gcggtgctgaagctactggagaacatgcccatgccctgggagcagatcagagacgtgcct
gtcctttaccacatcactggagccatctccttcgtcaacgagatcccgtgggtcatagag
cctgtctacatcgcccagtggggcgccatgtggatcatgatgcgtcgtgagaagagggat
cgtcgtcacttcaagcgtatgcgcttccctccttttgacgatgaggaacctccgctggac
tacgctgataacatcctggacgtggagccactggaggccatccagatggagctggatgca
gaagaggactcctccgtggctgagtggctctacgaacaccagcccctcaaggacgccaac
aagtatgtgaacgggaccacgtacaggcgttggcagttcaccctgcccatgatgtccacg
ctgtaccgtctggccaaccagctgctgactgacctggtggactacaactatttctacctg
tttgacctgaaggccttcttcacctccaaggccctcaacatggccatccccgggggacct
aagtttgaacccctagttagggacatcaacctccaagatgaagactggaacgagttcaac
gacatcaacaagatcatcatcagacagcctatcaggacagagtacaagattgccttccca
tacctgtacaacaaccttccccaccacgttcacctcacctggtaccacactcccaatgtg
gtgttcatcaagactgaggatcctgatttgccagcgttttactttgaccccctgatcaac
cccatctcccacagacactcagtcaagagtcaggagcctctgccagaggatgacgaagag
tttgagcttccagagtacgtggagcccttcttgaaggagacgcccctctacacagacaac
acagccaatggaatcgctctgctctgggcaccacgccccttcaacttgcgctctgggagg
accaggcgggccatcgacatcccactcatcaagaactggtatcgtgagcactgcccggcc
ggccagccagtgaaggtgcgtgtgtcttaccagaaactgctcaagtactatgtactcaac
gctctcaaacacagaccacccaaggcccagaagaagaggtacttgtttcgttcctttaaa
gccaccaagttcttccagtcgactaagctggactgggtggaggtgggcctgcaggtgtgc
agacagggatacaacatgctgaacctgctcatccaccgcaagaacctcaactacctgcac
ctggattacaacttcaacctcaagcctgtcaagaccctcaccacgaaggaacgtaagaag
tccaggttcgggaatgccttccatctgtgcagagaggtgctgcgtctcagcaagctggtg
gtggacagccacgtgcagtacagactgggcaacgtggatgctttccagttggcagatggg
ctgcagtacatctttgcccatgtgggccagctgactggcatgtaccgctacaagtacaag
ctgatgagacaaatccggatgtgcaaggacctcaagcacctcatctactaccgcttcaac
actggtccagtgggtaagggtccaggctgtgggttctgggcaccaggatggagagtgtgg
ctgttctttatgaggggcatcacccctctgctggagagatggctgggcaacctgctggcc
aggcagtttgaaggtcgtcactccaagggcgtggcgaagactgtgacgaagcagcgtgtg
gagtcccactttgacctggagctgcgtgcggccgtgatgcacgacatcctggacatgatg
cctgagggcatcaagcagaacaaggccagaaccatcctgcagcacctctctgagtcctgg
cgctgctggaaggccaacatcccctggaaggtcccaggcctgcccacacccatcgagaac
atgatcctacgctacgtgaaggccaaagctgattggtggaccaacacggcccactacaac
cgcgagcgaatcaggcgcggcgcaaccgtggacaagactgtgtgcaagaagaacctgggt
agactgacccgtctgtacctgaaggctgagcaggagaggcagcacaactacctgaaggat
ggtccatacatcacagcagaagaggctgtggccatctacaccacaacagtccactggctg
gagagcagacgcttctcccccatccccttccccccactgtcctacaaacacgacaccaaa
ctgctcatcctggccctggagaggctcaaagaggcctacagtgtgaagtccaggctgaac
cagtctcagagagaggagttggggctgatagagcaggcctatgacaaccctcacgaggcc
ctgtccagaatcaaacggcacctgctcacacagagagccttcaaagaggttggcatagag
ttcatggacctgtacagtcacctggtgcctgtgtatgatgtggagcccctggagaagatc
acggatgcctacctggaccagtacctgtggtatgaggctgacaaacgacgtctcttcccc
ccctggatcaaaccagctgacacagagcctcctccactccttgtctacaagtggtgccaa
ggcatcaacaacctgcaggatgtgtgggagacgatggagggagagtgtaacgtgatgctg
gagtctcgctatgaaaagatgtatgagaaaatagatctgacgctgctcaacagactgctg
cgtctcatcgtggaccacaacatcgctgactacatgactgccaagaacaatgtggtcatc
aactacaaggacatgaaccacaccaactcgtacggtatcatccgtggtctgcagtttgca
tcgttcatcgtgcagtactacggcctggtcatggacctgttggtgctggggctccaccgg
gccagtgagatggctggaccccctcagatgcccaacgacttcctgtccttccaggataca
gccaccgagagtgctcaccccatccgcctctattgcagatacattgaccgcatacatatc
ttcttcaggttctcagctgatgaggccagggacctgatccagaggtacctaacggagcac
cctgaccccaacaatgagaacattgtgggctacaacaacaagaagtgctggcccagagac
gccaggatgagactgatgaagcacgacgtcaacctgggtcgtgctgtgttctgggacatt
aagaaccgcctgcctcgctctgtgaccacggttcaatgggagaacagctttgtgtcagtc
tacagcaaagacaaccctaacctgctcttcaacatgtgtggcttcgagtgccgcatcctg
cccaagtgtcgcaccagctacgaggagttcacccacaaggacggagtatggaacctgcag
aacgaggtgaccaaagagcgtactgcccagtgtttcctgcgtgtggatgatgagtccatg
cagcggttccacaacagagtcagacagatcctcatggcctcaggatccaccacctttacc
aagattgtcaacaagtggaacacggctctgatagggctgatgacgtacttccgtgaggcg
gtggtcaacacccaggagctgctggacctgctggtgaaatgtgagaacaagatccagacc
cgtatcaagatcggtctcaactccaagatgcccagtcgcttcccccctgtggtcttctac
acccccaaggagctgggagggctgggcatgctatccatgggacacgtcctcatcccacag
tccgatctgaggtggtcaaagcagactgacgttggcatcacccatttccggtccggtatg
agccacgaggaggaccagctgattcctaacctgtaccgctacatccagccctgggagagt
gagttcatcgactcccagagagtttgggcagagtatgccctgaagagacaggaggctatc
gcacagaacaggcgtctgaccctggaggacttagaggactcttgggacagaggtatcccc
cgtatcaacaccctgttccagaaggacagacacacgctggcctacgacaagggctggagg
gtccgcactgacttcaaacagtaccaggttctgaagcagaacccgttctggtggacccac
cagcgtcacgatgggaagttgtggaacctcaacaactacaggacagacatgatccaggct
ctgggaggggtggagggcatcctggaacacacactcttcaaagggacctacttccccacc
tgggagggtctcttctgggagaaagccagtggctttgaggagtccatgaagtggaagaag
ctgaccaacgcccagagatctggtttgaaccagatccccaaccgtcgcttcaccctctgg
tggtcccccaccatcaacagggccaacgtgtacgtgggtttccaggtgcagctggatctg
accgggatcttcatgcacggaaagatccccaccctgaaaatctccctcatccagatcttc
agggctcacttgtggcaaaagatccacgagagtgtcgtcatggatctctgtcaggtgttt
gaccaggagctggatgccctggagatcgagacagtgcagaaagagaccattcaccccagg
aagtcctacaagatgaactcttcctgtgccgacatactactcttcgcctcctacaagtgg
aacgtctcacgcccctccctgctcgctgactcaaaggacgtgatggacagcaccaccacc
cagaagtactggatcgacatacagcttcgctggggagactacgactctcacgacatcgag
cgctacgccagagccaagttcctggactacaccacagacaacatgagcatctacccctcc
cccaccggggtgctcatcgccatcgacctggcctacaacctccacagtgggtacggtaac
tggttcccgggaggcaagcccctgatccagcaggccatggctaagatcatgaaggccaac
cctgctctgtacgtcctgagggagcgcatccgtaagggtctgcagctctactcctcagag
cccactgagccctacctgtcctcccagaactacggcgagctcttctccaatcagatcatc
tggtttgtggacgacactaacgtataccgtgtcaccatccacaagacgtttgagggtaac
ttgaccaccaagcccatcaacggagccatcttcatcttcaaccccaggacaggccagctc
ttcctcaagatcatccacacctctgtgtgggccggacagaaacgtctgggacagctggcg
aagtggaagacagctgaggaggtggctgctctgattcgttcacttcctgtggaggagcag
cccaaacagatcattgtcaccagaaagggcatgttggaccccctcgaggtccacttgctg
gacttccccaacattgtgatcaagggctctgagctacagctgcccttccaggcctgtctg
aaggtggagaagtttggagacctaatcctgaaggccaccgagcctcagatggtcctgttc
aacctgtatgatgactggctcaagaccatctcctcctacaccgcgttctcccgtctcatc
ctgatcctaagggcgctccatgtgaacaacgaccgtgccaaggtgatcctgaagcccgat
aagaccaccatcacagagcctcaccacatctggcccacgctgaccgatgaggagtggatc
aaggtggaggtgcagctcaaagacctcatcctggccgactatggaaagaagaacaacgtg
aacgtggcatctctgacccagtctgagatccgtgacatcatcctgggcatggagatctct
gctccgtcccagcagcgccagcagattgctgagattgagaagcagaccaaggagcagtcc
cagctcactgccacgcagacacgcacagttaacaaacacggagatgagatcatcacctca
acaacctccaactacgagacacagaccttctcctccaagacagaatggagagtcagggcc
atctctgctgccaacctgcacctgaggaccaaccacatctatgtgtcgtctgatgacatc
aaggagacgggctacacctacatcctgcccaagaacgtcctcaagaagttcatctgcatc
tcagacctgcgagcccagattgcaggttacctgtacggcaccagtccccctgacaacccc
caggtgaaggagatcaggtgtattgtcatggtaccccagtggggaacgcatcagaccgtc
cacctacccaatcagctgccaggacacgagtacctcaaggagatggagcccctgggttgg
atccacacccagcccaacgagtctccccaactctccccccaggacgtcaccagccacgcc
aagatcatggctgacaaccccgcctgggatggagagaagaccatcatcatcacctgcagt
ttcactcctggctcctgcactctgacggcctacaagctgactcccagtgggtacgagtgg
ggcagacagaacacagacaagggcaacaaccccaagggctacctgccctcccactatgag
agggttcagatgcttctgtctgatcgcttcctgggcttcttcatggtgcctggacaggtc
tcctggaactacaacttcatgggtgttcgccacgaccccaacatgaagtatgacctgcag
ctgtccaaccccaaggagttctaccacgaggtccatcggccctctcacttcctcaacttt
gcctccctgcaggagggagagatctacaacgcagacagagaggacatgtatggttga
DBGET
integrated database retrieval system
