Oncorhynchus tshawytscha (Chinook salmon): 112234873
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Entry
112234873 CDS
T05605
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp31-like
KO
K12844
U4/U6 small nuclear ribonucleoprotein PRP31
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112234873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112234873
Spliceosome [BR:
otw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
112234873
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nop
Prp31_C
Motif
Other DBs
NCBI-GeneID:
112234873
NCBI-ProteinID:
XP_042164045
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Position
LG03:complement(4864702..4869669)
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AA seq
532 aa
AA seq
DB search
MSLADELLADLEEAGDEGEDGLYLGEEGESDGEAGEGHVEGGLEDIPEEMEVDYSGAESV
SSIAKLRNSKQFSEIMDKIAIYVEKQRKNSEVSGPVEADPEYKLIVAANNLTVEIENELN
IIHKFVRDKYSKRFPELESLVPNSLDYVRTVKELGNNLDKCKNNENLQQILTNATIMVVS
VTASTTQGTMLGEDELKRLEEACDMALELNQSKHRIYEYVESRMSFIAPNLSVIVGASTA
AKIMGIAGGLTNLSKMPACNLMLLGTQKRTLSGFSSTAVLPHTGYIYHCDVVQTLPPDLR
RKAARLVSAKCTLASRVDSFHESADGKVGYDLKEEIEKKFDKWQEPPPVKTVKPLPAPLD
GQRKKRGGRRYRKMKERLGLTEIRKHANRMTFAEIEDDAYQEDLGFSLGQLGKSGSGRVR
QAQVNEATKARISKSLQRKLQKQNMTYGGRSTVGGRSTVGSRSTVGGRSTVGGRSSVRDN
SSGTSSSVAFTPLQGLEIVNPHAAEKKVAEANQKYFSNMAEFLKVKKEGEGK
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgtctctggccgatgagctcctggctgatctggaggaggcgggggatgagggggaggat
gggctgtacctgggggaagagggggagagtgatggggaggcaggggagggacatgtagag
ggaggtttggaggacattccagaggagatggaagtggactacagcggagctgagagtgtc
tcgtccatcgctaaactacgtaacagcaaacagttctcagagatcatggacaaaattgca
atctatgtcgagaagcagcgcaagaactctgaagtctccggtccggtggaggcagaccca
gaatacaagctcatcgttgctgccaataacctcacagtagaaattgagaacgaactgaac
atcattcacaagtttgtacgtgacaagtattctaagaggttccctgagttggagtccctg
gtgcccaactctctggattacgtccgcactgtcaaggagctggggaacaacctggacaag
tgtaagaacaacgagaatctgcagcagatcctgaccaacgccaccatcatggtggtcagc
gtcacggcctccaccacacaggggacgatgctgggtgaggatgaactgaagaggttggag
gaggcctgtgacatggcgctagagctgaaccaatcaaaacacaggatctatgaatatgtg
gagtctaggatgtcattcattgctcctaatctgtcagtcatcgttggagcctcgaccgca
gccaagatcatgggtattgctgggggcctgaccaacttgtctaagatgccagcctgtaac
ctgatgctactgggaacccagaagaggaccctgtcagggttcagcagcaccgctgtgctc
ccacacaccggctacatctaccactgtgatgtggtccagactctacccccggacctgagg
agaaaggcagcacgcctggtttcagctaagtgcaccctggcatcccgagtggacagcttc
cacgagagtgcagacggcaaggtgggctacgacctgaaagaggagatcgagaagaagttt
gataaatggcaggagcctccaccagtgaagactgtcaaacccctgccagcaccgttggac
ggacagaggaagaagagaggagggcggaggtatcgtaagatgaaggagcgtctgggtctg
acagagatcaggaaacacgccaacaggatgaccttcgcagagattgaggatgatgcgtac
caggaggacctgggtttcagtctgggccagctggggaagtcgggcagcggacgcgtcaga
caggctcaggtcaacgaggccaccaaggccaggatatccaagtccctacagaggaagctg
cagaagcagaacatgacatacggcggcaggtccacagttggcggcaggtccacagtcggc
agcaggtccacagtcggcgggaggtccacagttggcgggaggtcctcggtcagagacaac
tcctcaggaacaagttccagcgtagccttcactccactacagggactggagatcgtgaac
ccgcatgcagcagagaagaaggtggctgaggccaaccagaaatacttctccaacatggca
gagttcctcaaggtcaagaaggagggagagggaaagtga
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