Oncorhynchus tshawytscha (Chinook salmon): 112234900
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Entry
112234900 CDS
T05605
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112234900 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112234900 (cnot3a)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112234900 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112234900 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
112234900
NCBI-ProteinID:
XP_042164024
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All DBs
Position
LG03:4851737..4862875
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AA seq
960 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKVIETQMERFKVVERETKTKAYSKEGLGLALKVDPAQRE
KEETGNWLTNTIDTLNMQVDQFESEVESLFIQTRKKKGEKEKQDRIEELKRFIERHRYHI
RMLETILRMLDNDSVQVDSIQKIKDDVEYYMESSQDPDFEENEFIYDDLDLEDIRESPMD
SQELDDESWDDHDDDAHAISSAALVATSPTGMGNIEDEMFLHSSSTPTSTTSSSPIPPSP
ATCTAENSEDDKKRGRSTDRDVSQSPAKNGTSSLLLSFSSSANSGSSSSSSSLVSMAAVV
GGNPGVPTSNSLIGSFSSAVQQHQPQPPQQPVLQPLQQPQQPQTKPCTPSPPSHPLLSTA
PSLPTPTTPISAAPNSLPQVSPGHILNSSLGLGLGLGKVGMTGTSSANSMSGLGLTGMSA
SLNTMAGLLSGSTHAPYAQAASLGGLGLSTTTQSSVSVESSSIPTSCSSGVTTNGAGTGL
GLLGSSPAHGSLTGGILGLVPGQSVIPGPPLIPLSPVGAAPGGAVGMMGGNGGSMGPIGG
VVGSNAAPARPPSGLKQNGSTSYSAVVAESTAESAFSTPSQSQSSQPSSLTSSASQPMDN
GPSLISSITLPPSSPSPSFSDSIPGGGSLLNGPHSYTQASEGLKLPTDLRQILMETRMSA
QAPEPAGAMATATNTRKRKQCQAPEPLSSLKAMAERAALGSGLDGEIPNLHLTDRDIFSG
SSAAPGTPAAPQPSLSEVSIPPSLGVCPLGPTPLSKDQVYQQTMQESAWTHMPHPSDSER
IRQYLMRNPCPTLPFHHQMPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKK
QSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagagaaaactccaaggtgaaattgacagatgtttgaaaaaggtagctgaa
ggcgtagaacagtttgaagacatttggcagaagcttcacaatgcagccaatgccaaccaa
aaggaaaaatatgaggcagaccttaaaaaagagattaaaaagctacagcgattgagggat
cagataaaaacatgggtggcatcaaatgagatcaaagacaaaaggcagctagtggagaat
cgcaaggtcatagagacgcaaatggagcggtttaaggtggtagagcgggagacaaagacg
aaggcctactctaaagaaggcctggggctcgccctgaaagtggacccagctcagagggag
aaagaagagacgggaaactggctaacgaatacgatagacactctaaatatgcaggtggac
cagtttgagagtgaggtggaatccctcttcattcaaaccaggaagaagaaaggagagaaa
gagaagcaggatcgcattgaggagctaaagaggtttatagaaaggcataggtaccacatt
cgcatgctggagaccatcctgcgcatgctagacaacgactcggtgcaggtggactccatc
cagaagatcaaggacgacgtggagtactacatggagtcgtcacaggacccagactttgag
gagaacgagttcatttacgacgacctggatctggaggacatccgtgagtcgcccatggac
agccaggagctcgatgacgagtcctgggatgatcatgatgatgatgctcatgctatcagc
tctgcagcgctggtggccacctctccaacgggcatggggaacatagaggatgagatgttc
ctccactcgagcagcactcccacctccaccacctcctcttcccccatccctccatccccg
gccacctgcactgctgagaactctgaggacgataagaagagagggcggtcgacagacagg
gacgttagtcagtctcctgcgaagaacggcacttcctccttgttgttgtccttttcctcg
tctgccaattccgggtcctcttcttcttcctcctctcttgtttccatggccgccgttgtc
ggaggcaaccctggggttcccacaagcaacagtctaataggaagcttcagcagcgccgta
caacaacatcagcctcaacctccacagcaaccagtcctgcagccactgcaacaaccacaa
caaccccaaacaaaaccttgcacccccagcccacccagccacccccttctctccaccgcc
ccctctctccccacacccaccacacccatctcagccgccccaaactccctgccccaggtc
tcgcctggtcatatcctcaactccagcctaggccttgggttgggcctgggtaaagttggc
atgacggggacaagcagtgccaactcaatgtctggtctgggcctgactgggatgtctgcc
tctctgaacaccatggcaggcctgctgtctgggtccacccatgccccttacgcccaggca
gcctcgttgggaggcctgggtctgagtaccactacccagtccagtgtctcagtggagagc
tcctccatccccacctcttgctccagtggagtgactaccaacggggctgggacaggcctg
ggcctgctggggtccagccctgcacacggctccctgactggggggatcctgggcctggtg
cctgggcagagtgtgatccctgggccccctctgatccctctcagcccggtcggtgctgcc
cctgggggggcagtggggatgatgggaggaaacggaggaagcatggggccaatcggagga
gtagttgggtcgaacgcagcccctgccagaccgcctagtggactgaagcagaacggaagc
acaagttacagtgctgtggtggcagagagcaccgcagagtccgccttcagcacacccagc
caatcacagagcagccagccttcctcgctgacctcctcagccagtcagcctatggacaac
ggtcccagcctcatcagctccatcaccttgccccccagctctccgtccccctcgttttct
gacagtatccccggtggagggagtctcctcaacggaccccactcctacacacaggcctct
gagggcctcaagcttcctacagacctccgtcagatactgatggagaccagaatgtcagcg
caggccccagagccggcaggggccatggctacagccactaacacacgaaagagaaagcag
tgtcaggccccggagcctctgagttctctgaaggcgatggctgagagagcagcattagga
tcaggtctagatggagagatccccaacctgcacctcacagacagagacatcttctctggt
tcgtcggctgcccccggcacgcccgcggccccccagccctccctgtcggaggtgagcatc
cccccttccctgggggtgtgtcccctgggtcccactccgctctccaaggaccaggtgtac
cagcagactatgcaggagtctgcttggacacacatgccgcacccctcagactccgagagg
atcaggcaatacctgatgaggaacccatgccccaccctgccattccatcatcagatgccc
ccccaccactcagactctatagagttctaccagagactgtccacagagacgctcttcttc
atcttctactacctggagggcactaaagctcagtacctgtcagccaaggctctgaagaag
cagtcgtggaggttccacaccaagtacatgatgtggttccagaggcacgaagaacccaag
accatcactgatgagtttgaacagggcacttacatctactttgactatgagaagtggggt
cagaggaagaaggaggggttcacctttgagtacaggtacctggaagaccgagacctgcag
tga
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