Oncorhynchus tshawytscha (Chinook salmon): 112235247
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Entry
112235247 CDS
T05605
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 2-like
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112235247
Membrane trafficking [BR:
otw04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
112235247
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_1
SH3_9
TPR_8
TPR_2
SH3_2
SH3_1
TPR_10
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
112235247
NCBI-ProteinID:
XP_042158946
LinkDB
All DBs
Position
LG21:31427565..31523201
Genome browser
AA seq
1958 aa
AA seq
DB search
MGNRLSHEDISPAELDALWREPPYTLAGTNEHFPGNDVVNPGVEGPGVESGGGEAEPDTY
WKRKEEFTRGSTVSLAVGERFSSDVVLVFSGRRRSGVIPDSELQEALRTRLRVVESNSQD
VIQLFKDLSARLLSVHAEKDSFVITFKTVEEMWKFSTYLALGYVARCLENFLCDQSFWLD
TELLRDLEITVTVDEEHLATLYLGLLLQEGSFFAKALVSSGEHSDEEEELCFRRNDLLMV
RDTGQDSHWEGTLLSTGQHGLVPVNNMQPLPYPFYQWFLRKYPGCAGCSPSERGQFDHPI
VTGSCEAVVDHNPVGSDELQLSRGDLIEIQGMLLRGLDLFIGTHCSTGNTGFVHKAHVKP
LNAKPLDGQLVFLNEEERASLSQVNPCSTEPRDSDLLERLFSSDISTVYKLDRLDQSDFT
YIRNQPEQEHKPPTSSRQSIISEKSDATLPYHFSYSPQNAVGRGGDGELLSFSLDDTFRE
MNEFQDDPPLFLEEGEESEVCDPTLTLLNVHHFQEDFLPLYDLHHSFLWLTFSGQSEEEL
LGHLEIVREGAKRMGMAWAHRRACFLLGRLCAKKLKYSQARVYYEEALGVSVDGFSDLPL
LIALYTNLTAIYLKQKMADKLPPALEKASALLLCLPSHTFTSLDEFELLKLVLRRSVVEG
DKHLEARACYLTASLFLLLRKIDDALPFAERLQFLTVTLSAEEGRPIAPLDLNWLLSRLY
HCKYMPYLALASLSLDTGQDHSLQDAFHRIELFSRNSVRLNPRWKEGTSLLPAQIVVYLQ
QALAIAERGDDLKTQRDLCLGLACVYQQHGALEKALRCAQQAVQTGGGINEEEGFEASVL
LGWLLVLTGQPERAQNTLQPLLQSLQGTDSPTQRGVIHNLLALCLRQQGGIPEAGSHLHH
ALTISRESGNQRNQALALANLGCLALGVGAPTLAERFLFRSLWLFLEIWESPVEEEHVQT
YLWLGRSYKDRGRSQDARLCYEMGLLISLQARNLPSQMVVAKVLSRHYADVLLYGQSILY
YEHCVSVSRDLKDKRLEGEYLEILSSLYLSLNTEKSSRKSLDYSKQSLRISIDLGKREEE
SKTWLQVGRIYYLIHEDELADMYLQAAVKTALRMNDPRFAMSIYEEAGDVFFKGNRNRLA
SLPFYRDGSLPFARSIRDVDSEFRLLSKLTELLMTQEEHEEALQYAILAVQISTKTGVCV
NERAAYHRLATVYYSLEQYEMTENYYLKSLSLSPAVLQHPLEARYYTKLYCRLGDLTLHK
LKDAYDSMGYFQLAQAAALEDRANPQALYVVYMKLAEIHANHMPDPLLCQAYRDRAQSLR
RELCGLGETDGRGGMTEGRGRETLQTAVPQTQILSKTDTEVTHGDSPTESSATDTEVTHG
DSPIDTELLVRPQNDIHYWLLVRTQYYIHYCLLVRTQNYNRYCLLVSTQYYIHYCLLVRT
QNYIHYCLLVRPQPQNYIHYCLLVRPKNYIHYCLLVRTQNYIHYCLLLLVRPQNDIHYWL
LVRTQYYIHYCLLVRIQNYNRYCLLVSTQYYIHYCLLVRTQNAIHYCLLNYNHYCLLVRT
QNYILYCLLVRPQNYIHYCLLVRTQNHIHYCLLVRPKNYIHYCLLVRTQNYNHYCLQVRS
QNYIHYWPQNYIHYCLLVRTQNYIHYWLLVRTQNYIHYCLLVRTQNYIHYCLLVRTQNYI
HYWLLVRTQNYIHYCLLVRTQNYIHYCLLVRTQNYIHYCLLVRTQNYIHYWLLNYNHYCL
LVRTQNYILYCLLVRPQNYIHYCLLVRTQNHIHYCLLVRPKNYIHYCLLVRTQNYNHYCL
QVRSQNYIHYWPQNYIHYCLLVRTQNYIHYWLLVRTQNYIHYCLLVRTQNYIHYCLLVRT
QNYIHYCLLVRTQNYIHYWLLVRPQNYIHYWLLIRSQNYNHYWLLVRTQNYIHYWLLFRT
QNYIHYWLLVRTQNYIHYWLLVRTQNYNLHWLLCLLTL
NT seq
5877 nt
NT seq
+upstream
nt +downstream
nt
atgggtaacaggctatcccatgaagacatctcccctgctgagctggatgcactatggaga
gaaccaccgtacacgctagcgggaaccaatgaacacttcccaggaaatgatgttgtgaat
ccaggggtggaagggccgggggtggagtctgggggcggggaggcggagccggacacttac
tggaagaggaaggaggagttcaccagaggaagcaccgtatcactggccgtgggtgagagg
ttctcctcagacgtggtgctggtgttcagcggtcggcggcgctcgggtgtaatacctgac
tctgaactacaggaggcgctccgtaccagactcagggtcgtcgagagcaacagtcaggat
gttatccagctcttcaaggacctgtctgcccgtctgctgtctgtccacgctgagaaggac
agctttgtcatcaccttcaagactgtggaggagatgtggaagttctctacctacctggct
ctaggctatgtggcgcggtgcctggagaatttcctgtgtgaccagtcattctggctggac
actgagctgctgagggacctggagatcactgtgactgtagacgaggaacacctggcaaca
ctctacctgggactgctgctgcaggaggggtcgttctttgccaaggcgctggtgagcagt
ggcgagcacagtgatgaggaggaggagctgtgtttcagacgtaatgacttgctgatggtt
agagacacggggcaggacagtcactgggagggcacccttctctccaccggacaacacgga
ctagtgcctgtcaacaacatgcaaccgctgccataccccttctaccagtggttcctgagg
aagtaccctggctgcgccggatgctccccttcagagagaggacagtttgaccaccctata
gtaactggttcctgtgaggctgtagtggaccataacccagtaggatctgatgagctccag
ctgagtcgaggtgacctgattgagatacagggaatgctactccgaggtctggacctgttc
ataggaacacactgctctacaggaaacaccggcttcgtacacaaggctcacgtgaagcca
ctcaacgccaaaccactagatggacaacttgtgtttctgaatgaggaggaacgtgcgtct
ctgtcccaggttaacccctgtagtactgagcccagagacagtgacctcctagagagactc
ttctcctctgacatcagtactgtctacaaactagacagactggatcagtctgattttacg
tacatcagaaaccaacctgaacaagagcataagccccccaccagtagccggcagtccatc
atctcagagaagagtgacgctacactcccataccacttctcctactcaccccagaatgct
gtagggcgtggcggtgacggggagttgctgtccttcagtctggacgacaccttcagagag
atgaacgagttccaggatgacccaccccttttcctggaggagggggaggagtcggaggtc
tgtgaccccaccttgaccctgctcaacgtgcatcactttcaggaggacttcctgcccctg
tatgacctccaccactcattcctgtggctgacgttctcagggcagagtgaggaggagtta
ctgggccacctggagattgtcagggagggggccaagagaatgggcatggcctgggcacac
cgacgggcatgcttcctactggggaggctctgcgccaagaagctcaagtactcccaggcc
cgtgtgtattacgaggaagcccttggagtctctgtcgacggtttctctgacctccctctc
ctcatcgccctctacaccaacctcacagccatctacctcaaacagaagatggccgacaag
ctgcccccggccctggagaaggccagtgctctgctcctctgtctccccagccacaccttc
acttccctggatgagtttgagctgctgaagctggtgctgcggaggtctgtggtggaaggg
gacaaacacctggaggcacgggcctgctatctcaccgccagcctcttcctgctccttaga
aagatagatgatgccctgcccttcgcagagcgtctccagttcctcaccgttaccctgtct
gctgaggaggggcgccccatcgcccccctggacctcaactggctcctgtcccggctctac
cactgtaaatacatgccctacctggccctggcatccctcagcctggacactggacaggat
cactcactacaggacgccttccacaggatagaactgttcagcaggaactcggtacgtctg
aacccgcgatggaaagaggggacgtctcttctcccagcccagatcgtggtgtacctgcag
caggctctggcaattgcggagcggggtgacgaccttaagacccagagagacctatgtctg
ggcctggcctgtgtttaccagcaacacggggccctggagaaggccctgcgctgtgcccag
caggctgtacagaccgggggaggtatcaacgaggaggaggggtttgaggcgtcagtactg
ctgggatggctgttagtcctgacgggacagcctgagagggcacagaacaccttgcagcca
ctattacagtctctacagggaaccgacagcccgacccagaggggagtgatccacaacctg
ctggctctgtgtctgcggcagcagggtggcatccccgaagccggcagccacctccaccat
gccctcaccatctccagggagagtggcaaccagaggaaccaggccctggccctcgccaac
ctgggctgcctggcactgggcgtgggggcacccacactagcagaacgattcctattcagg
tctctgtggttgttcctggagatctgggagagtcccgttgaagaggaacacgtccagacc
tacctatggttggggcggagctacaaggacagggggaggagccaggatgccaggctgtgt
tatgagatgggcctcctcatctccctccaggccaggaatctacccagtcagatggtggtg
gctaaagtcctgagtcgtcactatgctgacgtgctgctgtatggacagagtatcctctac
tatgagcactgtgtgtctgtgtccagggacctgaaggacaagagactagagggagaatat
ctagagatcctcagtagcctctacctgtccctcaatactgagaaatcatcaaggaagtct
ctggactacagtaagcagagtctgcgtatctccatcgacctggggaagagagaggaagag
tcaaagacctggcttcaggtgggacgcatctactacctcatccatgaagacgaactggct
gacatgtacctacaggcggcagtgaagacagccctgaggatgaacgacccacgctttgcc
atgagtatctacgaggaggcaggagacgtcttcttcaaaggcaacaggaacagactggcg
tcactgcccttctacagggacggcagtctcccttttgctcggagtatccgtgacgtcgac
tcagagttcagactgctgagtaaactgactgaactgctgatgacccaggaagaacacgaa
gaggctctacagtacgccattctggctgtacagatcagcaccaaaacaggtgtgtgtgtg
aacgagcgcgcagcgtaccaccgtctggctacagtgtactacagtctggagcagtatgag
atgacagagaactactacctcaagtctctgtctctcagccctgctgtactgcagcacccc
ctggaggctagatactacaccaagctctactgcaggctgggggacctgaccctgcacaaa
ctaaaggatgcctatgactcgatgggctactttcagcttgctcaggctgctgccctggag
gaccgtgccaacccacaggcactgtatgtggtctacatgaagctggcagagatccatgcc
aaccacatgccagacccactgctctgccaggcttacagggacagggcacagagcctgagg
agggaactctgtgggctgggagagacggatgggaggggaggaatgacagaggggagggga
cgagagaccctacagacagcagtgccacagacacagatcctctccaagacagacacagag
gtaacccatggagacagccctacagaaagcagtgccacagacacagaggtaacccatgga
gacagccctatagacacagagctactggtcaggccccagaacgacatccactactggcta
ctggtcaggacccagtactacatccactactgtctactggtcaggacccagaactacaac
cgctactgtctactggtcagcacccagtactacatccactactgtctactggtcaggacc
cagaactacatccactactgtctactggtcaggccccagccccagaactacatccactac
tgcctactggtcaggcccaagaactacatccactactgtctactggtcaggacccagaac
tacatccactactgtctactgctactggtcaggccccagaacgacatccactactggcta
ctggtcaggacccagtactacatccactactgtctactggtcaggatccagaactacaac
cgctactgtctactggtcagcacccagtactacatccactactgtctactggtcaggacc
cagaatgccatccactactgtctactgaactacaaccactactgtctactggtcaggacc
cagaattacatcctctactgtctactggtcaggccccagaactacatccactactgtcta
ctggtcaggacccagaaccacatccactactgtctactggtcaggccaaagaactacatc
cactactgtctactggtcaggacccagaactacaaccactactgtctacaggtcaggtcc
cagaactacatccactactggccccagaactacatccactactgtctactggtcaggacc
cagaactacatccactactggctactggtcaggacccagaactacatccactactgtcta
ctggtcaggacccagaactacatccactactgtctactggtcaggacccagaactacatc
cactactggctactggtcaggacccagaactacatccactactgtctactggtcaggacc
cagaactacatccactactgtctactggtcaggacccagaactacatccactactgtcta
ctggtcaggacccagaactacatccactactggctactgaactacaaccactactgtcta
ctggtcaggacccagaattacatcctctactgtctactggtcaggccccagaactacatc
cactactgtctactggtcaggacccagaaccacatccactactgtctactggtcaggcca
aagaactacatccactactgtctactggtcaggacccagaactacaaccactactgtcta
caggtcaggtcccagaactacatccactactggccccagaactacatccactactgtcta
ctggtcaggacccagaactacatccactactggctactggtcaggacccagaactacatc
cactactgtctactggtcaggacccagaactacatccactactgtctactggtcaggacc
cagaactacatccactactgtctactggtcaggacccagaactacatccactactggcta
ctggtcaggccccagaactacatccactactggctactgatcaggtcccagaactacaac
cactactggctactggtcaggacccagaactacatccactactggctactgttcaggacc
cagaactacatccactactggctactggtcaggacccagaactacatccactactggcta
ctggtcaggacccagaactacaacctccactggctactttgtctcctcaccctgtaa
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