Oncorhynchus tshawytscha (Chinook salmon): 112235265
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Entry
112235265 CDS
T05605
Symbol
gigyf1a
Name
(RefSeq) GRB10-interacting GYF protein 1 isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112235265 (gigyf1a)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
112235265 (gigyf1a)
Surveillance factors
Other surveillance factors
112235265 (gigyf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
GYF_2
TRI4_N
Motif
Other DBs
NCBI-GeneID:
112235265
NCBI-ProteinID:
XP_024259448
LinkDB
All DBs
Position
LG10:complement(19762424..19794709)
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AA seq
1105 aa
AA seq
DB search
MRVCTRVCRCEQACMLCVSWCVTDRCILFLHFSPDTQLCKDVRNMTAETLNFGPEWLRAL
SSGGSVTSPPPSPAMPKYKLAEYRYGREEMLALYIKENKAPEDMQDKEFVSILQDEPMQP
LALEPLTEEEQRNFSMSVNSVAVLRLMGKGGGVAPAGVARGRGTTRGGGRGRGRGESGGF
YQRSIEEGEVGFGRGAREIHRSQSWDDRGERRFEKPVRAREGVRVGFEEVTGVPVPGVPR
KDYTRSDSENWRSLREEQEEDEEEGADPGGSWRLAGARRLDDGGPKSAGWREHDGQVEGR
RRKFEFDFGGGRRRAGSEGLEDDRDGLPEWCTDEEGEMGTFDASGAFLPISKGGKEDELD
FQGIEEEEEGGESLSDMKRIMNGGQRVDVKESAGTSPSSSSSSSPPGPLSAPPALALNPP
MPQLSLTVAELEASQMANSHPVPVPVLVKASKMPSEVLEGSPAGSSTTQQSPSTTSSLPS
PPPSSSAANHLSLPPGGDTEDDEGMKHLQQEAEKMVASLQDTSLEEESFTQTLQESRNTA
SALPLSHDAAMKWFYKDPQAEIQGPFPTLEMCEWFQAGYFSMSLLVKRGCDEGFQPLGDV
IKMWGRVPFAPGPSPPPLLVRPPPPRPQPLPPRGSAGSMDQERLKKQQEQAAAVLYQQLQ
QQQQLFQLISRCGEQGILPSVNRSMSVPDTGSMWDMHTSASQQSGGEASLWDLTMNSSTQ
GPTLEQLQKLQQERREAELRAKREEEEQRKRREEKRRQQEEQKRREEEEIFRRKQCRQQQ
DLIMKLLQQAPQQGSGSGVGSGWGTGGLNKSGAKGLSLLDMQEAERLLKQQQRAQQQQRE
RHQGLSMGGSSMGQWGDGGAVTGSLWGGGGGMEGKAGGGMGLWDEAVKNQTRSSSMQGLK
NSRSSPSLSEQYMLSCRKQRTDEEDKLLKLLQGIKMPQDGFTTWCEQMLHALNTQANNTS
SPLDVSTIVAYLKEVESPYEVHDFIRSYLGDTMEAKEFAKHFLERRAKQKQNLQRQQQQL
SKEVAGLAMSNFPLPDSMRGVSPSTLQSMFQAAQMGKGGLYDTQGAMKKKKQPVVLHSDP
SILGYSYHNAGERLSLNEMEMVEDY
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgtgtgcacacgtgtttgtcggtgcgagcaagcatgcatgctgtgtgttagttgg
tgtgtcactgacagatgcattcttttcttgcacttttctccagatactcagctctgtaaa
gacgtaaggaatatgactgctgagacacttaacttcggccccgaatggctccgtgcacta
tccagtggggggagtgtgacgtccccccctccttcccccgccatgccaaagtacaagctg
gccgagtatcgctacggccgagaggagatgttagcactttatatcaaagagaacaaggcc
ccggaggacatgcaggataaggagtttgtgtctattctgcaagatgagcccatgcagccg
ctggcactggagccactcactgaggaggagcagaggaacttctcaatgtctgtgaacagt
gtggctgtgctgaggctcatgggtaaaggagggggagttgccccagcgggcgtggcccga
ggcagaggcaccacgcgaggaggaggcagagggcgaggtcgaggcgagagtggaggattc
taccaaagaagtattgaggagggagaggtaggcttcggccgtggagccagagagatccac
cgcagccagagctgggacgacaggggtgagaggcgttttgagaagcctgtgcgtgccagg
gagggggtacgtgttggcttcgaggaggtgactggtgtccctgtgcctggggtaccgagg
aaggactacacgcggtcggacagtgagaactggcgtagcctccgagaggagcaggaggag
gacgaggaggagggggccgaccccgggggcagctggagactggccggagcacggagatta
gatgatggcggtccaaagtcagcaggctggcgggagcacgacggtcaggttgaggggcgt
cgcaggaagtttgagtttgacttcggcgggggtcgcaggcgggccggcagcgaggggtta
gaggacgacagagacggactgcctgagtggtgcactgatgaagaaggagagatgggcacc
ttcgacgcttccggagccttcctacccatatccaagggaggaaaggaggatgaattggac
ttccagggaatagaagaggaggaagaagggggggagagtctttctgacatgaagaggatc
atgaatggaggacagagagtcgatgtaaaggaatccgctggtaccagtccctcttcctcc
tcctcctcttctccccctggccccctctctgcccctccagctctggctctcaaccccccc
atgccccagctgtccctcaccgtggctgagctggaggcctctcagatggccaacagccac
cctgtccctgttcctgtccttgtcaaggccagcaagatgccaagtgaagttctcgagggc
tctccagcagggtcctccaccacccaacagagccccagcaccacctccagtctgccttca
ccccctccctcctcctctgctgctaaccatctctccctgccaccggggggtgacaccgag
gacgacgagggcatgaagcacctgcaacaggaggcagagaagatggtggcgtccctgcag
gacacatctctggaggaggagagtttcactcagacactgcaggagagcagaaacacagcc
tccgccctgcccctctcccacgacgctgccatgaagtggttctataaggacccccaggca
gagatccagggtccattccccactctggagatgtgcgagtggttccaggcgggctacttc
tccatgtctctgctggtgaagaggggctgtgacgagggcttccagccgctgggtgacgtc
atcaagatgtggggacgcgtgcctttcgcccccgggccctccccgccgcccctgctggtg
agacctccaccgccacgccctcagcctctaccgccccgggggtctgctggtagcatggat
caggaacgtctgaagaagcagcaggagcaggcagcagcagttctctatcaacagctccag
cagcagcagcagctattccagctcatcagcaggtgcggagagcagggtattttgccttcg
gtgaacaggtcgatgtcagtgccagatacagggtccatgtgggacatgcatacctcagct
tcacagcaatcaggcggtgaagccagtttatgggacttaacaatgaattcttcgactcag
ggtccaactctcgaacagcttcagaagctccagcaggagaggagagaagctgaactcagg
gcaaagcgcgaggaggaggaacagcgcaagaggagggaagagaagaggaggcagcaggag
gagcagaagaggagggaggaggaggagatcttcagacgcaaacagtgtcgtcagcagcag
gacctgatcatgaagctgctccagcaggccccccagcagggctcaggctccggggtgggg
tctggctggggcactgggggtctcaacaagtcaggggccaagggcctcagtctgcttgac
atgcaggaggcagagaggcttcttaaacagcagcagagagcccagcagcagcagagagaa
cgtcaccaaggcctgtcaatggggggttcctccatgggtcagtggggggacggaggtgct
gtcacgggcagcctgtggggaggcggaggggggatggagggtaaggctgggggcggcatg
ggtctgtgggacgaggcagtgaagaaccagaccagaagtagcagcatgcagggactgaag
aacagccgcagcagcccctcactcagtgagcagtatatgctgagctgtaggaagcagcgt
acggatgaggaggacaagctgctgaagctgctgcagggcatcaagatgcctcaggatggg
ttcaccacctggtgtgaacagatgctgcacgccctgaacacccaagccaacaacacctcc
tctccactggacgtgtccaccatcgtggcgtacctgaaggaggtggagtctccctacgag
gtccatgactttatccgctcctacctgggagacaccatggaagccaaagagtttgccaag
cacttcctggagcgccgtgccaaacagaaacagaacctgcagcggcagcagcagcagcta
tcaaaggaagtagctgggctggccatgagcaacttccctctgccggactccatgcgggga
gtgagccccagcaccctgcagtccatgttccaggccgcccagatggggaagggagggctg
tacgacacccagggggccatgaagaagaagaaacagcctgtggtgctgcactctgacccc
agcatcttagggtactcataccacaacgcgggcgagcgtctgagcctgaatgagatggag
atggtggaggattactga
DBGET
integrated database retrieval system
