Oncorhynchus tshawytscha (Chinook salmon): 112235288
Help
Entry
112235288 CDS
T05605
Name
(RefSeq) basal cell adhesion molecule isoform X1
KO
K06578
Lutheran blood group glycoprotein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
otw04090
]
112235288
CD molecules [BR:
otw04090
]
Proteins
112235288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
V-set
C2-set_2
C2-set_3
C1-set
Orf78
DUF3377
Psg1
RNF152_C
S1FA
Motif
Other DBs
NCBI-GeneID:
112235288
NCBI-ProteinID:
XP_042160829
LinkDB
All DBs
Position
LG23:22509457..22617280
Genome browser
AA seq
618 aa
AA seq
DB search
MDGMVAFGRASLSCTLLLCFSLQVCWAVVTVTVTPKVEVIKGESASLPCTFKIPPSPNKI
VEWFIEEGGTRKRVAFRSVSGGEGKSDEGTRLSDRVTIGRDFSLNISPVAVEDQLPFYCQ
VTAGPAGVGEAITQLKVFFAPEMPEVTGSNQAISVGDSSTQVGQCVSHNGHPQPRIIWFQ
DSKPLPEVKDNKEKVYMVPSVVKEASGLFTITSTLMMQPQKADKDSVYHCTVEYSMPNDM
IKQIDSDTFSLTLNYPSETATFVLVNTEPIREGDEVKMMCETDGNPQPEIEFFKDGINIK
EGVAGGLLTLKSVKRSDAGVYKCMATDFDNLDADLNGEVTLSVHYIDPMSVSPAGPLSTM
TGDMVELQCKTKASDSHTVQWKKGSTVLSQTGVLSLKSVTFAEAGEYSCVGAVPSVLGLT
SKASVNLTVSGKPEIEAAVDEIVEKEGDMVTLSCSAHGHPAPQFTWTPSGKESVSVKDNK
VVSMVMLEASAAVLKDGVTCEASNDHGAASQVFKVTIKQAVDPNAANDAGRGNHVLKTAD
KQQGGSSGVVIAVVVCVLMLLLLVALLYFLNKKGKLPCSKKDNKEVASGDVNNDIVVEMK
TEKANEEAGLLNKPGAQQ
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggacgggatggtagcatttggacgcgcttcgctctcgtgcaccttgctgctttgcttt
tcattgcaagtgtgctgggccgtcgtgacagtgacagtgactcccaaggtggaggtgatc
aagggagagtcagccagtctgccctgcaccttcaaaatccctccctccccgaacaaaatc
gtggagtggttcattgaggagggtggcaccaggaagcgtgttgcgttccgctccgtgtcg
ggcggcgaggggaagagtgatgaggggacacgtctgtccgacagagtgaccattggaagg
gacttctctctgaacatctcccctgtggcggtggaggaccagctgcccttctactgccag
gtcactgctggccctgccggggttggagaggccatcacacagctcaaagtcttcttcgct
ccagagatgccagaggtcactggatccaaccaggccatatctgtaggagactcctccaca
caggtgggccagtgtgtgagccataacggtcacccccagcccaggatcatctggttccag
gactccaagcctctgcctgaggtcaaggacaacaaagagaaggtgtacatggtgccgtca
gtggtaaaggaagcatcaggtctgttcaccatcaccagcaccctgatgatgcagccccag
aaggctgacaaggacagcgtataccactgcaccgtggagtacagcatgcccaacgacatg
atcaaacagatcgactctgacaccttctccctcaccctcaactatccctctgagacagcg
acctttgtcctggtgaacactgagccaatcagagagggtgacgaggtgaagatgatgtgt
gagacagacggaaaccctcagcctgagattgagttctttaaggatgggataaacattaag
gaaggagtagcagggggacttttgactctgaagtccgtcaagcgttcggatgctggggtg
tacaagtgtatggccaccgactttgataacctggatgctgatcttaatggagaagtcacc
ctctctgtccactacattgacccaatgagtgtgagccctgctggtccattgtcgacaatg
acgggagacatggtggagctgcagtgtaagaccaaggcctcagactcacacaccgtccag
tggaagaagggctccacggtgctgtcccagactggtgtcttgtctctgaagtcggtgaca
ttcgctgaagctggcgaatactcctgcgtgggcgcagtgccctctgtgcttgggctcacc
tccaaggccagcgtcaatctaaccgtctcaggtaaacctgagattgaggcagctgttgat
gaaattgtggagaaggagggagacatggtgactctgtcctgctctgctcacggacatcct
gccccacagttcacctggacaccctcaggaaaggagtcagtgtcggtgaaggataacaag
gtggtcagtatggtcatgctggaggccagtgctgcggtcctgaaggacggggtcacctgc
gaggccagtaacgaccacggcgcagcctcccaggtcttcaaagtcaccatcaaacaagca
gtcgatcccaacgcagccaatgatgcaggcagagggaaccatgtgcttaaaacagctgat
aagcagcagggtggctccagtggcgtggtgatagccgtggtggtgtgtgtcctaatgctg
ctgctgctggtggcactcctctacttcctcaacaagaagggcaagctgccctgcagcaag
aaggacaataaggaagtggcaagtggggatgtgaataatgacattgtggtggagatgaag
acagaaaaggccaatgaagaggctggcctcctgaacaagccaggagcacagcagtga
DBGET
integrated database retrieval system
