Oncorhynchus tshawytscha (Chinook salmon): 112235376
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Entry
112235376 CDS
T05605
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112235376
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
otw03310
]
112235376
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
112235376
Nuclear receptors [BR:
otw03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
112235376
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
TPR_IFT122
Motif
Other DBs
NCBI-GeneID:
112235376
NCBI-ProteinID:
XP_042162968
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All DBs
Position
LG03:932068..963772
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AA seq
508 aa
AA seq
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MEFEEHDSPEHITTEEPIKRGDTVSKKTHLRDTVSKKTHLTQIEVIPCKICGDKSSGVHY
GVITCEGCKGFFRRSQLPSVSYSCSRQSNCPIDRASRNRCQSCRLQKCVTQGMSRDAVKF
GRMSKRQRESLHAEVERHRQQQQHLQAEAQPALPYPSKACRFRTPHLLQAPAPAYSFPGE
PELPPCLTDVLPYLVCSPGESQAPGLAYQGSCVSPSSGHSDERGFDSRQPSPDQTIGMGI
RSYDPEDPYCPYPPSHSLLHIEELCDSIVRSHRDTSQFRLEELQALRWKLFSREEIHAYQ
SKSVDEMWQHCAVRLTEAVQYVVEFAKSIPGFRGLGQNDQITLLKTGSMEVVLVRMSRCF
NTENSTVFFDGKFGSTELFKSLGCGDLMVAVFDFAHSVCALRLTEQQMALFSSLVLINPD
RPCLEDRGRVHRMRRDLEVCLSHMLRRDNQESLQDKLYQKVSVLRSLCSLHVEKLHWFSQ
RYPLTVHSVFPPLYKELFTSDLPSVDSL
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggaatttgaggagcacgattcacctgaacacatcactacagaagaaccaatcaaaaga
ggagacactgtgtccaagaagactcatttgagagacactgtgtccaagaagactcatttg
actcagattgaggtgattccctgtaagatttgtggtgataaatcatcaggagttcactat
ggagtcatcacctgcgagggctgcaagggttttttccggcgtagccagctgccgtccgtg
tcctactcctgttccagacagagtaactgtcctatagacagagccagccgcaaccgctgc
cagagctgccgactgcagaagtgtgtgacccagggcatgagccgggatgcggtgaagttt
ggtcggatgtcgaaacgtcagcgggagtcactgcatgccgaggtggagagacaccgtcag
cagcagcagcatctccaggcagaggcccaacccgccctgccctaccccagcaaggcatgc
cgtttccggacaccccacctgctccaggccccggctccggcctactccttccctggagag
ccagagctgccaccctgcctgacagatgtgctcccctacctggtgtgctccccaggcgag
tcccaggctccaggtctggcctaccagggctcctgtgtgtctcctagtagtgggcactca
gacgaaagagggttcgactcccgtcagccgtctcctgaccagacgatagggatgggaatt
agatcgtatgacccagaagacccctactgcccttaccccccctcccactccctgctacac
atagaggagctgtgtgacagtatcgtgcggtcccatagggacaccagtcagttcagacta
gaggaactacaggctctgagatggaagttgttcagcagagaggagatccatgcctaccag
agcaagtcagtagatgagatgtggcagcactgtgccgtgaggctgactgaagcggtacag
tacgtggtggagtttgccaaaagcatcccagggttccgtgggcttggacagaacgaccag
atcaccctgctcaagactggatcgatggaggtggttctggttagaatgagcaggtgtttt
aacacagagaacagcaccgtcttcttcgatgggaagtttggcagcactgaacttttcaag
tctctgggctgtggtgatctgatggtggcggtgtttgacttcgctcacagtgtgtgtgcc
ctgagactgactgagcagcagatggctctcttcagctcactggtgctcattaaccccgat
cgcccctgtcttgaggatcgaggcagagtacatagaatgagaagagacttggaggtatgc
ctcagccacatgctacgcagagacaaccaggagagccttcaggacaagctctaccagaag
gtgtcagtgttgcggtctctgtgcagtcttcatgtggagaagctgcactggttcagccag
cgctacccgctcaccgtccactctgtcttccctcctctatacaaggagctgttcacctct
gacctgccttctgtggactccctctga
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