Oncorhynchus tshawytscha (Chinook salmon): 112235428
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Entry
112235428 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: ras and Rab interactor 2-like
KO
K23687
Ras and Rab interactor 2/3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112235428
Membrane trafficking [BR:
otw04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
112235428
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RIN1
VPS9
RA
SH2
Lpg0393_VPS9
RA_2
RelB
Motif
Other DBs
NCBI-GeneID:
112235428
NCBI-ProteinID:
XP_042166841
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All DBs
Position
LG32:14577483..14641389
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AA seq
1042 aa
AA seq
DB search
MAATLPSTLPSILPSILPSTLPRPDCHMDRSASFFKVSDGLTDSDLSMSATLPRPDCHTD
RRGSFFKLIDTFALEIGELKQEMVQTSPTEDRDPYPMVLQGLEGEVSGVYLQSSPCAGAS
GERDSGYDSLRRRMSVLDRLRHTHPVWLLLTLSDKEATRILLQQPPGVFLVRKSSTLQRK
VLSLRVSDDDASGGAGVCDFPVRESQYTFSLEGSGISFADLFRLVAFYCISRDVLPFTLN
LPEAIAAAKTQKDLEEVAQLGAGFWHSALGSLRRTTTPSRPPPQRPDRDGDIQGAERTQE
KQSATRHSSVPPARPSSSSSSRLERSQSNGALCFVNPLFLQTHRRLEEDPQSSSTSPSPY
VTHSTPSPGTTGGTSSAPVTDPNVKRKSRPPRPPPPPVPSYSRPRSLSQRRQAPPPPLFP
RSPRAACPKRPQPLSAGNPHPIRTFAPPLALPWVPGTAAIPKRRRAAPPSLYPTNTLHPP
PPRPKKPDIDAHRCHIALDDETIAKALSRAKLPPCQAPAIPAPSIVGNGAGSPPSPPGKT
PRREGQEGRLSDMSISTSSSDSLDYSHPPLSLPASPPLRLRHHLGNNEDSSDDEDLCDEE
EEDYGVSLENDLEQGLRPPFKARRRGVGVGVKVALSFRKVSGVFSTFMTPERRAVRRIAE
LSRDKSSYFGCLVQDYISFVQENKGCHTSGLDLLQTLRQFMTQMKAYLTQSSELDPPIES
LIPEDQIDSVLEKAMHKCVLKPLKGVVEVALHDFQVSSGGWQQLRENLALAKTRRPQDLG
VDGAVPPDPMAIEKIRHKFHNMRKMYSPDKKVSLLLRVCKLIYTIMQDNSGRMYGADDFL
PMLTYVLAQCDMPQLDTEILYMMELLDPSLLHGEGGYYLTSAYGAMALIKNFQEEQAARV
LSSEARDTLHQWHRRRTAQRTAPSVDDFQNYLRVALQEVNSGCTAKTLLVHPYSTTEEVC
SLCTYKFNVHDPENHALFLITEATSQQLAPDTHPQRIKAEIHSHPNSQPFHFVYRRVPNL
NLCIPAIPANQHNGNCLANWMN
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggctgctacgctgccatctacgctgccatctatactgccatctatactgccctctacg
ctgcccagaccagactgtcatatggacaggagcgcaagcttctttaaggtctcagacgga
ctcacagactcagacctaagcatgtctgctacgctgcccagaccagactgtcatacggac
aggagaggaagcttctttaagctgatagacacgtttgcgttggagataggggagctgaag
caagagatggtccagacctccccaacagaggacagagacccataccctatggttctacag
gggttggagggggaggtgagcggggtttacctccagtcctcgccctgcgctggcgccagt
ggtgaaagggattctgggtacgactctctgcgtaggcggatgagcgtgctggacagactg
aggcatacgcaccccgtgtggctacttctcacgctcagtgacaaggaggccacgcgtata
ctgctgcagcagcctccaggggtattcctggtgaggaagtcatccactcttcagaggaaa
gttctgtctctaagggtcagtgatgatgacgcctcaggaggagccggcgtctgtgacttc
cctgtcagagagagtcagtacaccttttctctggaaggatctgggatcagttttgcagac
ctgtttcgcctggtggccttctactgtatcagcagggacgtccttcctttcaccctgaat
ctcccagaagccattgcagccgccaagactcagaaggacctggaggaggtggcccaacta
ggagcaggattctggcactctgctctaggcagcctgcgaaggacaaccactccctctcgc
cctccaccacagcgccctgacagagacggtgacatccagggtgcagagaggacacaagag
aaacagagtgcgactcgccacagcagcgttcctccagctcgtccctcttcctcctcctcc
tctcgcctggagagaagccagtccaacggggctctttgcttcgtcaaccccctcttcctc
cagactcaccggcggcttgaggaagaccctcaatcctcttccacctctccttccccctac
gtcacacactccacccccagcccgggaactaccggtgggacgtcttcggcccctgtcacg
gaccccaacgtgaaaaggaagtcacgtccccctcggcccccgcccccccccgttccctcc
tattcccgcccccgttccctctcccagcgccgccaagctcctcccccacccctcttcccc
agaagcccaagagcagcatgcccgaaacgcccacagccattgtcagcaggcaaccctcat
ccaatcagaaccttcgccccacccctcgccctcccatgggtgccaggcacagcagccatt
ccaaaaagacgacgagcagcgccgccatccctgtaccccaccaacaccctccaccctcct
cccccacgccccaaaaaacctgacatcgacgcccaccggtgccacatcgctcttgatgac
gagactatcgccaaggctctgtcccgtgccaagcttcccccgtgccaggcaccggccata
cccgctccctccatagtgggaaatggtgctggtagccctcccagccctccgggtaagacc
cccaggcgagagggacaagaggggaggctgagcgacatgtccatctccacctcttcctca
gattctctggactactcccaccctcccctctccctccccgccagcccccctctcagatta
cggcatcaccttggcaacaacgaggacagcagcgacgacgaagacctctgtgacgaagaa
gaggaagactacggcgtcagcctggagaacgacctggaacagggcctccgtcctcccttc
aaagcccgccggagaggggtcggagtcggggtcaaagttgcgctgagcttccggaaggtt
tctggagtcttcagcaccttcatgaccccagaaaggcgagccgtgaggaggatagcggag
ctctccagggacaagagttcctacttcggatgcctggttcaggattatatcagttttgta
caggagaataaggggtgtcatacgtcaggcttagacctcctgcagaccctcagacagttc
atgacccagatgaaggcctacttgacgcagagctccgaactggacccgcccatcgaatcc
ctcatacccgaggatcagatagactctgtcctggagaaggccatgcacaaatgtgtgttg
aagccgctgaagggcgtagtggaagtggccctgcacgactttcaggtgagcagtggaggc
tggcagcagctgagggagaacctggccctggctaagacccggaggccccaggacctgggt
gtggatggggctgtgccccctgaccccatggccatcgagaagatccgccacaagttccac
aacatgaggaagatgtactccccggataagaaggtgtcgctgctgctccgagtgtgtaaa
ctcatctacaccatcatgcaggataactcagggaggatgtacggagcagatgacttccta
ccgatgctgacctatgtcctggcccaatgtgacatgcctcagctggacactgagatcctc
tacatgatggagctgctggacccctcactgctgcatggagagggtggctactacctgacc
agtgcgtacggggccatggctctcatcaagaacttccaggaggaacaggcagccagggtc
ctcagctctgaggccagagacaccctgcaccagtggcaccgccgacgcaccgcccagcgc
acggcaccctccgtggacgacttccagaactacctgcgagtcgccttacaagaagtcaac
agcggctgcacagccaaaaccctcctagtccacccgtactccaccaccgaagaagtatgc
tcgctctgcacctacaagttcaatgttcatgaccccgagaaccacgccctctttctcatc
actgaggcaaccagtcagcagcttgccccggacacacacccccagcgaatcaaagcggag
atacacagccacccaaactcgcaacccttccattttgtctaccgcagagtgcccaacctt
aacctgtgtataccagctatcccagctaaccagcacaatggcaactgcctagccaattgg
atgaattaa
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