Oncorhynchus tshawytscha (Chinook salmon): 112235473
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Entry
112235473 CDS
T05605
Name
(RefSeq) retinoic acid receptor gamma isoform X1
KO
K08529
retinoic acid receptor gamma
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112235473
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
otw03310
]
112235473
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
112235473
Nuclear receptors [BR:
otw03310
]
1. Thyroid hormone like
1B. Retinoic acid receptor (RAR)
112235473
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
112235473
NCBI-ProteinID:
XP_042155558
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Position
LG16:complement(74427167..74540445)
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AA seq
510 aa
AA seq
DB search
MATNRERQVGHMTGFPPAVYPFAFNSMRNHSPFDLLANSRLFGRFSTDLPKEMAALSVET
QSTSSEEMVPSSPSPPPPPRIYKPCFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYT
CHRDKNCQINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKDVKEELVLPESYELSG
ELEELVNKVSKAHQDTFPSLLQLGKYHTNSSAEQRVQLDLGLWDKFSELSTKCIIKIVEF
AKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF
GPLTDLVFAFAGQLLPLEMDDTETGLLSAISLISGDRMDLEEPQKVDKLQEPLLEALKIY
ARRRRPNKPHMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLENPEAFED
QTESSGESSPPPAPPPIPPASSKPPTTMKTEAEDEEDSWGTEPSPEEEDEDDYDDGEEED
RDRGSDSEGESWALEGSSEGARKNHAGRAQ
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggctaccaacagggagcggcaggtgggtcacatgacagggtttccaccagctgtctac
ccatttgccttcaactccatgcggaaccactcccccttcgacctgctggccaatagccga
ctgtttgggaggttcagcacagacctccctaaagaaatggccgcactctcggtggaaacc
cagagcaccagctctgaggagatggtccccagctctccctctccacctcccccaccacgc
atttacaaaccctgcttcgtgtgccaggacaagtcctctggataccattacggagtcagc
tcatgtgagggctgcaagggcttcttccgacgcagtatccagaagaacatggtgtacacc
tgccaccgagacaagaactgccagatcaacaaggtcaccaggaaccgctgccagtactgc
cgactgcagaagtgctttgaggtcggcatgtccaaggaagcggtgcgtaatgacaggaac
aagaagaagaaagacgtgaaggaggagttggtgttgccagagagttatgagttgagtgga
gaactggaggagctggtcaacaaagtcagcaaagcccaccaagacaccttcccctcactg
ctgcagctgggcaaataccacaccaactccagtgcagagcagcgcgtgcagctggacctg
gggctgtgggataagttcagtgagctttccaccaagtgcatcatcaagatcgtggagttt
gccaagcgcctccccggcttcaccaccctcaccatcgctgaccagatcaccctcctcaaa
tcagcctgcctggatatcctgatgttgaggatctgcacccgctacactccagagcaggac
accatgaccttctcagacgggctgaccctgaaccggacccagatgcacaacgcaggcttc
ggcccgctcacagacctggtgtttgcctttgctggccagctgctgcctctggagatggac
gacacagagacgggcctcctcagcgccatctctctcatctctggagaccgtatggacctg
gaagagccccagaaggtggacaagttgcaggagcccctcctggaggccctgaagatctac
gcacgtcgcagacgccccaacaaaccccacatgttcccccgcatgctgatgaagatcact
gacctcagaggcatcagcactaagggggcagagagagccatcactctgaagatggagatc
ccaggccccatgcctcctctgatcagggagatgttagagaacccagaagcattcgaggac
caaacagagagcagtggagagagctccccaccgcctgcccctccacccattccaccagcc
tcctccaagccccccaccaccatgaagactgaggctgaggacgaggaggacagctggggg
acagagccttccccagaggaggaagatgaggatgactatgatgatggggaggaggaggat
cgggacaggggctcggacagcgagggggaatcctgggctctggagggtagcagcgaaggg
gctaggaagaaccatgccgggagggcgcagtga
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