Oncorhynchus tshawytscha (Chinook salmon): 112235492
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Entry
112235492 CDS
T05605
Symbol
robo1
Name
(RefSeq) roundabout homolog 1
KO
K06753
roundabout, axon guidance receptor 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112235492 (robo1)
Cell adhesion molecules [BR:
otw04515
]
Immunoglobulin superfamily
ROBO family
112235492 (robo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
V-set
C2-set_2
Ig_5
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Toxin_19
Motif
Other DBs
NCBI-GeneID:
112235492
NCBI-ProteinID:
XP_042152315
LinkDB
All DBs
Position
LG13:77247675..77671242
Genome browser
AA seq
1691 aa
AA seq
DB search
MRAVEAGMAARRMPLLLLLLEVLSGACMPGDGQGRYKSGWRWKGDRTRSRLRQEDSPPRI
VEHPSDLIVSKGEPATLNCKAEGRPSPTVEWYKDGERVETDRDNPRSQRMLLPSGSLFFL
RIVHGRRSKPDEGSYVCVARNYLGEAVSHNASLEVALLRDDFRQNPADIMVAAGEPAVLE
CMPPRGHPEPSISWKKDGANIDDRDERITIRGGKLMITNARKSDAGKYVCVGTNMVGERE
SEIAELTVLERPSFVKRPGSQVVLVDQSVEFRCEARGDPVPTVRWRKEDGELPKGRYEIR
EDHTLKIRRLTSADMGSYTCVSENMVGRAEASATLTVHVLSVPPVFVVRPRNQVVAVGRT
VTFQCEATGNPQPAIFWQREGSQNLLFSYQPPQPSSRVSVSQTGDLTITDAERSDVGYYS
CQALNIAGSVITKALLEVTDVVSDRPPPVVRQGPTNQTVSVDGTVVLSCLATGKPTPTIM
WRKDGVLVSTHDSRVKQLDTGALQIRYAKLGDTGMYTCIASTPSGEASWKAYLDVQEFGV
PVQPARPTDPNLIPSAPFKPEVTDVTRTSVTLSWKPNFSGATPTSYIIEAFSHASGSSWQ
TLAEHVKTESYVLKGLKASAVYLFLVRAANAYGLSDPSPITDTVKTQGGYPPTSQGVDHR
QIQRELGEVVIHLHNPTILSSSSVRVQWTVEQQSQYIQGYKVMYRASPEGQQRSDWAVFE
VRTPGEDSTVVPQLRKGVTYEFKVRPFFNEFQGTDSEVKIAKTLEEAPSAAPRGVTVTES
GENGTAIMVSWQPPPEEEQNGVVQEYKIWCLGNESRYHVNRTVDGSTFSLLIPSLAPGIR
YSVEVAASTGAGPGVKSDVTFFQIDSSGHVTEGVLEPENTLSQQISEVVKQPAFIAGIGA
ACWIILMVFSIWLYRQRKKRSGLSTNYAGIRKVPSFTFTPTVAYQRGGEAVSSAGRPGLL
NIGESATQPWLADTWPNSCSNHNDCSMNCCTAGQGNSDSNLATYSRPADCIANYNNQMES
KQTNLMVPEGGVYGDVDLSNKINEMKTFNSPNLKDGRFVGPGGPGGQPTPYATTQLIQSS
ILGNNINTDRGVGGGGGGGAETNEKHGWKPNPVQGQKQQEMTSQLHQYNIMEQNKLNKDH
YRGGDSPMATTIPYNQAHEAHTVGSHNSSDHGSSSTSGSQGQKKGVRTPKLPKQSAMNWA
DLLPPPPANPPPCRNMEEYSLSMNESYDPDMQCSLPPSRMYLQPDELEEEEEEMERGPTP
PVRGAASSPAAVSYSHQSTATLTPSPQEELQPMLQDTTDSMVSGHERRRHVVSPPPLSPS
HTYGYISSPMSLDTDGMEEEEEMLEEEEEEEEGDKTDAEVAKVHHHHTHPHHPHHPHHPQ
QMHSRRLLLRGLEQTPASSMGDLESSVTGSMINGWGSASEEDNASSGRSSAVSSSDGSFF
TDADFAQAVAAAAEYAGLKVAKYPNPTQGQEGGPGARKYQMTPSGHRPGSPPSTDSNMST
ANMHKRPPKKQKQHPAASHPGLQRREAYAEDLPPPPIPPPAGLKSPTHPSKTALEARGMM
SPKAGEGRDRRGDSGGGYRPREGSDPRTSSSERRETQDRQKIPRAGKGNKQEGGSTKARQ
HPGPEDILPYSRPSFPTVHSPRDRDPSSSSSMSSRGSGGRRRGEGGPGARRNPNDMGAFQ
PGDDDLEMVET
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgagagctgtggaggcaggcatggctgcaaggcggatgcccctgctgctactgctgctg
gaggtgctgagtggagcatgtatgccaggggatggacaggggaggtacaagagtggctgg
aggtggaaaggtgacaggacccgatcccgtctgcgccaggaggactccccaccccggatc
gtagagcacccctctgacctgatcgtgtccaagggggagcccgccaccctcaactgcaag
gcggaggggcggcccagccccacggtggagtggtacaaggacggggagcgggtggaaacg
gaccgggacaaccctcgatctcaacgcatgctgctgcccagcggctccctcttcttccta
cgcatcgtccacggacgacgctccaaaccggatgagggctcctacgtctgcgtcgcccgc
aactacctgggagaagctgtcagccacaacgcctcgttggaagtagcattactacgtgat
gacttcagacagaaccctgctgatataatggtggcagcgggcgagcctgcagtcctagag
tgtatgccccctcgtgggcatcctgaacctagcatatcctggaagaaggacggtgccaac
attgatgacagagatgaacgaatcactatccggggaggaaagctgatgataaccaatgcc
agaaaaagcgatgctgggaagtatgtgtgtgtcgggaccaacatggtgggagagagggag
agtgagattgctgagctgactgtgctcgagcgacccagctttgtgaagcgtcccggcagc
caggtggtgctggtggaccagagcgtggagttcaggtgtgaggcccggggcgacccggtt
cccaccgtccgctggaggaaagaggacggagagctgcctaagggaagatatgagatccgt
gaggaccacaccctgaagatccgtcgtctgacctctgcagacatgggttcttacacctgc
gtgtcagagaacatggtgggcagggcagaggcgtcggccaccctcaccgtccacgtcctt
tctgtgccccctgtgtttgtggtgcggcccaggaaccaggtggtggcggtggggaggacc
gtcaccttccagtgtgaggcaacaggaaaccctcaacctgctatcttctggcagagagag
ggcagccagaacctgctcttctcctaccagcccccccagccgtctagtcgcgtctccgtc
tcccagacgggggacctgactatcacagatgcagagcgctcagacgtgggctactacagc
tgccaggccctcaacattgctggctctgtcatcaccaaggctctgctggaggtcactgac
gttgtgtctgatcgcccacctccagttgtccgccagggtccgaccaatcagacagtctct
gtggacgggacggtggttctgagttgcctagcaacgggtaagcccacccccaccatcatg
tggaggaaggatggggtgttggtgtccactcatgactcccgggtcaaacagctggacacg
ggcgcactgcagatccgctacgccaagctgggtgacacaggcatgtacacatgcatcgcc
tccactcccagtggcgaagcctcgtggaaggcctatctggatgttcaagagtttggtgtt
ccagtgcaaccggccagacccactgaccccaacctgatccccagcgcccccttcaaacct
gaagtcactgacgtcacccgcacctccgtcactctgtcctggaagcccaacttctcagga
gccacgcccacctcctacatcatagaggccttcagtcatgcatcaggcagcagctggcag
accctggcagaacatgtgaagactgagtcgtatgtactgaagggcctgaaggccagtgct
gtctacctcttcctggtccgagctgctaacgcctacggcctgagtgaccccagccccatc
actgacaccgtcaaaacacaaggtggatatccccccaccagtcagggagtggaccaccgt
cagatccagagggagttaggagaggtggtcatccaccttcacaaccccaccatcctctcc
tcctcctctgtcagagtgcagtggacggtggagcagcagtctcagtacatccagggttat
aaggtgatgtaccgtgcctctccagagggccagcagaggagtgactgggctgtgtttgag
gtgagaaccccaggggaggacagtactgtggtgccacagctcaggaagggagtcacttac
gagttcaaagttcgccccttcttcaacgagttccagggaacagacagtgaggtcaagata
gccaagactctggaggaagctcccagtgcagcccctcgtggggttaccgtcacagagagc
ggggagaatgggaccgccatcatggtctcctggcaaccgcctccagaggaggagcagaac
ggggtggtccaggagtacaagatctggtgtttggggaatgagagcaggtaccatgtcaac
cgtacggtggacggctctaccttctccttgctgatccccagcctggctccagggatccgt
tacagtgtggaggtcgcagccagcactggggcaggcccaggggtcaagtctgatgtcacc
ttcttccagatagactcatcaggacatgtgacggagggtgtgttggagccagagaacacc
ctgtcccaacagatcagtgaggtggtgaagcagccggccttcatagcagggataggagcg
gcatgttggatcatcctcatggtgttcagtatctggctctaccgacagcgtaagaagagg
agtggcctcagcactaactacgcaggcatccgcaaggtaccatcttttaccttcactcct
acagtggcgtaccagagaggtggagaggctgtcagcagtgctggaaggccaggtttgctg
aacattggggagtctgctacccagccctggttggctgatacctggcccaactcctgctcc
aatcacaacgactgtagcatgaactgctgcactgcaggacagggcaacagtgacagcaac
ctggctacatacagccgcccagccgactgcatcgccaactataacaaccagatggagagc
aagcagaccaacctgatggtgcctgagggaggagtgtacggagacgtggatctctccaac
aagatcaacgagatgaagaccttcaacagccccaacctgaaggacggacgcttcgttggg
ccgggtggaccagggggacagcccaccccgtacgccaccacacagctcattcagtcttct
atcctgggaaacaacatcaacacagacagaggggtaggagggggagggggagggggagcg
gagacaaacgagaaacacggctggaaacccaaccctgttcaggggcagaagcaacaggaa
atgacctcacagctccaccaatataacatcatggagcagaacaagctgaacaaggaccac
tacagaggaggggacagtcccatggctaccaccatcccctataaccaggcccacgaggcc
cacaccgtgggctcccacaacagctctgaccatggcagcagcagcacctccgggagtcaa
ggtcaaaagaagggagtgcgcacccccaaactacccaaacaaagtgcaatgaactgggct
gaccttctgcctcctccccctgctaacccacctccctgccgcaacatggaggagtactcc
ctgtctatgaacgagagttatgacccagatatgcagtgctccctacccccctcccgcatg
tacctgcagccagacgaactggaggaggaggaggaggagatggagaggggtcccactcca
cccgtcagaggtgctgcctcgtcccccgccgcggtgtcctacagccaccagtccacagcc
accctcaccccctcgccccaggaggagctgcaacccatgctccaagacacaacagacagc
atggtctctggacacgaacgcagacgccatgtagtgagcccccctcccctctccccctca
cacacctacggttacatctccagccccatgtctctggacacagatggcatggaggaggag
gaggagatgttggaggaagaggaggaagaggaggaaggggacaagacagacgcggaggtg
gccaaggtgcaccaccaccacacccaccctcaccaccctcaccacccccaccacccccag
cagatgcacagcaggaggctgctgctgcggggcctggagcagacgccagcctccagcatg
ggggacctggagagctctgtgacgggctccatgatcaacggctggggttcagcctccgag
gaggacaacgcctcatcaggacgctccagtgccgtcagctcctcagatggatccttcttc
acagacgccgactttgcccaggccgtggcggctgctgcagagtacgcaggcctcaaggtg
gccaagtaccccaaccccacgcaaggccaggagggaggccccggagcgcgaaagtaccaa
atgaccccctcaggccaccgtccgggcagccccccttccacagacagtaacatgagcacg
gccaacatgcataagaggcctcctaagaagcagaaacagcaccctgcagcgagccaccca
gggctccagagacgagaggcctacgctgaagatctgcctcctcctcccatcccacctcca
gcagggctcaagtcccccacacatccctccaagacagccctggaggcccgggggatgatg
tctcccaaggcaggcgagggcagggacaggagaggggactcaggaggagggtaccggcca
cgggagggatcggacccccgtaccagctcctcagagcgccgggagacccaggacagacag
aagatcccccgtgcagggaaagggaacaaacaggaggggggcagcaccaaggcacgccaa
cacccaggaccagaggacatcctgccctacagccgcccctccttccccacggtccacagt
cccagagacagggaccccagctcctccagctctatgtcctcccggggctcaggggggcgg
cggagaggagagggggggccgggggcccgcaggaaccccaacgacatgggggccttccag
ccaggagacgatgacttagagatggtggagacctga
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