Oncorhynchus tshawytscha (Chinook salmon): 112235544
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Entry
112235544 CDS
T05605
Name
(RefSeq) E3 ubiquitin-protein ligase RNF115-like
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112235544
04121 Ubiquitin system [BR:
otw04121
]
112235544
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112235544
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
112235544
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112235544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-RING_UBOX
zf-rbx1
zf-C3HC4
zinc_ribbon_9
zf-Nse
zf-RING_5
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
C1_2
HypA
Motif
Other DBs
NCBI-GeneID:
112235544
NCBI-ProteinID:
XP_042161047
LinkDB
All DBs
Position
LG23:27610729..27618528
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AA seq
313 aa
AA seq
DB search
MAEAAAVPPHRFFCHCCKGEVSPKLPEYICPRCESGFIEEVTEDSSLLEGGTNGTDDTAT
QFAELWHLLFVERPFTVDGDSPDSELRVPGGGVGVGSGGLGGGPIGGSVPAGLGGPLGGP
LGGGEHWGPGRPPRLHSQRRYRSRGSSRPDRSPAVEGIVQQFLAGLFANSGVPGSPPLSW
TGMLHSNPGDYAWGQGGLDAVITQLLGQFENTGPPPAEKEKISSIPTVNVSQDQADCSME
CPVCKEDFAVGEPVRQLPCNHFFHSDCIVPWLEMHDTCPVCRKGLNGEDSNTQNPPESPS
LNTDPRTQERWSF
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagctgcggcggttcccccgcatcggttcttctgtcattgttgtaagggagaa
gtaagccccaagctcccggagtacatctgtcccaggtgtgagtctggctttatagaggag
gtaacagaagattccagtctgctagagggtggcactaacgggacagatgacacagccaca
cagtttgcagagctgtggcacctgttgtttgtagagaggcctttcacagtggatggtgac
agtccagactcagagctccgggtccctggtgggggggttggggtaggatcggggggcctg
ggaggaggtcctatcggagggtcagtccctgctgggctaggaggacctctggggggtcct
ctgggagggggggaacactgggggcccggtcgcccccctcgcctgcacagtcagcggagg
taccgctccagagggagcagcagacctgaccgctcacctgccgtagaggggatagtacaa
cagtttctggctggtctatttgccaactctggagttcctggctcacctcccctctcttgg
acagggatgctacactctaacccaggggactatgcttggggacaggggggactggatgca
gtcatcacacagttgttaggtcagtttgagaacacgggccctcctcctgcagagaaagag
aagatctcctccatacctacagtcaacgtgtctcaggatcaagcagactgcagtatggag
tgtccggtgtgcaaggaggactttgcagtgggagagcccgtcagacagctaccctgcaac
cacttcttccactcagactgtatagtaccctggctggaaatgcatgatacgtgtcctgtg
tgtaggaaggggttgaatggagaagacagcaacacccagaaccccccagaatccccctct
ctaaatacggacccccgcacacaggagagatggtccttctga
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