Oncorhynchus tshawytscha (Chinook salmon): 112235553
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Entry
112235553 CDS
T05605
Symbol
ptchd1
Name
(RefSeq) patched domain-containing protein 1
KO
K24682
patched domain-containing protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112235553 (ptchd1)
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
Other domain-containing proteins
Patched domain-containing proteins
112235553 (ptchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
Motif
Other DBs
NCBI-GeneID:
112235553
NCBI-ProteinID:
XP_042173190
LinkDB
All DBs
Position
Unknown
AA seq
942 aa
AA seq
DB search
MVGVPAVSSRWWERLKTLCPERARRMLRQVLQAGLRSSFQALGRFVASHPVFFASAPVLV
SVLLGASFSRYRVEGNVESLLVPKHSLAKIEGNLVDSLFPVNRSKHTLYSDLQTPGRYGR
VIVTSRRGSILDPLHTDLVLKLHRAVVQLQVPVLGFNYSFSHLCLLDDKNTCIIDDIIRA
LEDSQSARFANRSSLPLRYPITRLADGRMAYIGHQLGGVQAWGAGPAVQGPGGVSGRGQG
VRSARALQLTYYLQARGALTDRVASQWEQAFCGELGRFGAGHPELSLYPFTSSSLRTDFQ
ASSVLARRPLLASVCVCLVLAVGCCSMRDCVRAKPWLGLLALLSIALSGLTAAGILNLTG
TTYNSTYLGVPFILLGHGLFGTFEMLSSWRRTREDQHVKERVASVFSDVMLRYSGATLLH
QVSLGLAASPLTNLEAVRLFCRCAALGITVGYLYTLSFYATCLVATGYLETGYRHGCFCR
RVPKKGALDTKPRWYRCLMYTRYQDETHSQTHSHTPNSTHTHTPMRPQDSHLLLGCVQRC
YGDWITNTYVKPFMVLLYLVYISFGLMGFLQVSQGSEPSSLVAMDTGTLLYARAQQRYFS
SYSPVIGFYVYESAPYWNTSVQRDLLEYAKGFQRISWLESYLDYLTERNLSTTSQSRESF
TRMLRLSFLRQPQFAHFADDIIFAERDEGEEPEMAASRVFLVAKTTENKREEMSVLLDTL
RRLSLTSRVRFLIFNPSFVYLDRYATAVSSPLRHSLMAVLFLLGLSSLAVVEPLVAVWLS
LTLLSVQFGVLGFMTLWGVELDCVSVLCLISALGHSADCCGPLLATFSSGRGDSRTVWVR
LALERHGVPSLQTLICYTAALLPLAAVRSNLTRSLFRCLVLTAFCSALHALAFLPTLLTF
LPPAKKTGSRQGDRGEGEGLREEVECVEMVDSTRVVDQITTV
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggtcggcgtgcccgctgtttcctctcgctggtgggagaggctcaagacgttgtgtcca
gagcgcgctaggaggatgctgcgccaggtgttgcaggcaggcctgaggagctctttccag
gctctgggtcggtttgtggcgagccacccagtcttcttcgcctccgcccccgtactggtg
tctgtcctgctgggggccagcttcagtcggtatagagtggaaggtaacgtggagtccctc
ctggttcctaaacacagtctggcaaagatagaaggaaacctggtggactcactgtttccc
gtcaacagatctaaacacaccctgtactctgacctgcagactccaggtcgttacggtcgt
gttatagtcacctctaggagaggcagcatcctggaccctctacacacagacctagtactc
aagctccatcgtgctgtcgttcagctccaggttccagtgttggggttcaactactctttc
tcccacctctgtcttctcgacgacaagaatacctgcatcatcgatgacatcatccgagcc
ctggaggacagccaatcagctcgcttcgctaaccgttcttcccttcctctgcgctaccca
atcacacgtttggctgacgggcggatggcctacattggtcaccagttaggaggggtgcag
gcgtggggggcggggcctgcagtacagggtcctgggggtgtgtctggtcgaggccaggga
gtccggagcgctagggctctgcagctgacctactacctgcaggctcgcggcgccctgaca
gacagggtggctagccaatgggagcaggcgttctgtggcgagctgggccggtttggggcg
ggacaccctgaactgagcttataccccttcacttcatcctctctaaggacagacttccag
gcgtcgtcagtgctggctcggcgccccctgctggccagtgtatgtgtgtgtttggtgtta
gccgtgggctgttgttctatgagggactgtgtgagagctaaaccctggctagggcttttg
gctctgctgtctatcgccctctctggtctcactgctgctggcatccttaacctgactgga
accacttacaactcaacctacctgggggtaccattcatactgctgggtcacggactgttt
ggcacatttgagatgctatcgtcatggagaaggacacgtgaggaccaacatgttaaggag
cgtgtagctagcgtattctctgatgtcatgctgcgttactcaggagctacactgctacat
caggtgtctctgggtctggctgcgtctcctctgaccaacctggaggctgtccggctgttc
tgtcgctgcgctgcattgggcataaccgttggttacctttacaccttgtccttctacgcc
acctgtctggttgccacaggttacctggagacagggtacagacacgggtgtttctgtcgc
cgcgtccccaagaagggagcgctggacaccaagccacgctggtaccgctgtctcatgtac
acacgctaccaggacgagacacactcacaaactcactcacacacacccaactctacacac
acacatacacctatgcgaccccaggactcacacttgttgctaggctgcgtgcagcgttgc
tatggagactggatcaccaacacctatgtgaagcctttcatggttctgctctacctcgta
tacatctcctttggcctgatgggcttcctacaggtgagccagggctcggagcccagttct
ctggttgctatggatacagggacgttgttgtatgctcgcgcccagcagcgctacttctcc
tcctactctcctgtgattggcttctatgtctatgagagcgccccctattggaacacctcg
gtacagcgagacctgctggagtacgctaaagggttccagcgaatcagctggctggaaagc
tacctggattacctgacagaacggaacctctccactaccagccaatcacgtgaaagcttt
acgcggatgctccgcctctccttccttcgccagccgcaatttgctcattttgccgatgac
atcatcttcgctgagcgcgatgaaggggaggagccagagatggcagcgtcacgtgtcttc
ctggttgccaagacaacagagaacaagagggaggagatgtcagtcctattggacacactg
agacgtctgtctctgacatcacgcgtccgctttctcatcttcaacccctccttcgtctac
ctggacaggtatgctacagcggtgagctctcctctacgccactccctgatggcggtgttg
ttcctgctgggtctgtcgtctctagcggtggtggagcccctagtggcagtgtggctcagt
ctaaccctcctctctgtccagtttggtgttctgggcttcatgactctgtggggcgtggag
cttgactgcgtgtctgtgttatgtctgatttcagcactgggtcactctgcagactgctgt
ggtcctctactggccaccttctcctctggccggggggacagccggaccgtgtgggtcaga
ctggcgttggagagacatggcgtcccctctctacagacgttgatctgctacactgcagcg
ctgctccctctggccgccgtccgctccaaccttacacgctccctattccgttgcctagtg
ctgacggcattctgttcagcgctccatgccttggccttcctgcccacgctgctcaccttc
ctgccacccgccaagaagacaggaagtagacagggagacagaggggaaggggaggggctt
agagaggaagtggagtgtgtggagatggttgacagcaccagggtggtcgaccagatcacc
accgtctga
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