Oncorhynchus tshawytscha (Chinook salmon): 112235569
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Entry
112235569 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: probable global transcription activator SNF2L2
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112235569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112235569
03036 Chromosome and associated proteins [BR:
otw03036
]
112235569
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112235569
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
112235569
Chromatin remodeling factors
BAF complex
112235569
PBAF complex
112235569
GBAF(ncBAF) complex
112235569
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
BRK
HSA
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
112235569
NCBI-ProteinID:
XP_042187099
LinkDB
All DBs
Position
LG12:complement(269223..433143)
Genome browser
AA seq
1589 aa
AA seq
DB search
MSTPTEHAGGMSQPHPGPSPCPGRSPGPGPSPSSGPPSGPPSGPPSLQGQGAGDYLQDTM
LPMHQPMEGVDEKGMGDETNYGQMKGVGMRALHSGMGPSQSPLDQHINQGYMPPQPSPWX
VPEHASSPLSRGGPTPPMPPQMSPVPSGSMIPQMDPQSAMGPQGPLGRGCSSFSPVQLQQ
LRAQILAYKILGRGQPLPENLQLAVQGKRSLPTMQQQQQQQQPSTGSPYSRPPGMSSMSG
PQSGPGPTITMPGQNQTHGSKPWPEGQGGDTPSNPQKLLAPPPSGRPSPAPPQAPPPGPM
SGPSITHQPQGQQPSPVITLQQKQNRVTPIQKPQGLDPTEILQEREYRLQARIAHRIREL
ESLPGALPPDLRSKATVELKALRLLNFQRQLRQDVVQCMRRDTTLETALNSKAYKRSKRQ
TLREARMTEKLEKQQKMEQERKRRQKHQEYLNSILQHAKDFKDYHRSITAKMQKQNKAIT
TWHTNTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLT
DLVYEHKAAQAANMKKKKKKQKKKNIDESGEGMSGIGPDGEPMDESSQMSELPVKVIQTE
TGKVLQGLDAPKSSQLEAWLEMNPGYEVAPRSDSEESGSEFEDEDEEEVPGVSSRPDSQS
EEKKIINPNSGEFPEKVTKHIIESAKQDVDDEYTVPETELTIFQQSYYGVAHAIIERVDK
QSSLLINGMLKHYQVQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNG
PYLIIVPLSTLSNWVYELDKWSPSVVKISYKGTPAMRRGLVAQLRSGKFNVLLTTYEYII
KDKQILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWAL
LNFLLPTIFKSCNTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEV
ESQLPEKVEYVIKCDMSAIQRVLYRHMQGRGILLTDGSEKDKKGKGGAKTLMNTIMQLKK
ICNHPYMFPHIEESFAEHLGFPNGVISGHELYRASGKFELLDRILPKLHVTNHRVLLFCQ
MTSLMTIMEDYFAYRNFLYLRLDGTTKSEDRAALLKKFNEKGSQYFVFLLSTRAGGLGLN
LQAADTVVIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLCTVNSVEEKILAAAKYKLNV
DQKVIQAGMFDQKSSSHERRAFLQAILETEEQNEEEDEVPDDETLNQMIARNEDEFELFM
SMDLDRRREDARNPKRKPRLMEEDELPSWIVKDDAEVERLTCEEEEEKIFGRGSRRRGDV
DYSDALTEKQWLRAVEDGNLEEMEEEIRLKKSRKRRRRGEKDGGREEGGEKAKKRRGRPP
AEKLSPNPPKLTKQMNAIIDTVINYRDRSNRQLSEVFVQLPSRKELPEYYELIRKPVDFK
KIKERVRSHKFRSVSDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQRIIKEE
ESEEDSDDDDDDDDDDDEEESEAESNSVRVKIMLGKECGGSSIGARHHNKDKGKKRLSRS
KAKPVVSDDDSDEDQDDNNQSEESRSEDE
NT seq
4770 nt
NT seq
+upstream
nt +downstream
nt
atgtccacccctacggagcatgcgggtggtatgtcccagccccacccgggtccctctccg
tgcccaggccggtccccaggaccaggcccctcccctagctccggaccccccagcggaccc
cccagcggaccccccagcctacaggggcagggggctggggactacctccaggacaccatg
ctccccatgcaccagccgatggagggcgttgatgagaaggggatgggagatgagacgaac
tatggccagatgaagggagttgggatgagggcactacacagcggaatgggcccttcacag
agccctctggaccagcacatcaaccaaggctacatgcccccacaaccctccccctggngt
gtcccagagcacgcttccagccccctatccaggggcggccctacgcctcccatgccccct
cagatgtcccccgtcccgtcgggctccatgataccccagatggacccccagtcagccatg
ggtccacaggggcctcttggtcgtggctgctcctccttcagcccagtccaattacagcaa
cttcgggcccagatcctggcctataagattctggggcggggccaaccacttcctgaaaac
ctccagctggcggtccagggcaagaggagtctgcccaccatgcagcagcaacaacagcag
cagcagccgagcactggcagcccctacagcaggcctcctggtatgtcctctatgtctggc
cctcagtcaggccctggtcccaccatcactatgccaggacaaaatcagacacacggatcc
aaaccctggcctgaaggccaaggtggtgatactcccagcaacccccagaagcttctagct
ccgccccccagtggtagaccctcacctgccccaccccaggcccctcctcctggacccatg
tccggcccctctattacccatcagccccagggacagcagccgtcgcccgtcatcacactg
caacagaaacagaaccgcgttacgcccatccagaaaccacagggcctggaccccacagag
atactgcaggagagagagtacagactgcaggctcgtatcgctcaccggatccgggagctg
gagagtctacctggagctctgcctccggacctgaggagtaaagccacggtggaactcaag
gctttgagacttctcaacttccaacgacagctgcgtcaggatgtggtccagtgtatgcgt
agagacaccaccctggagacggccctgaactccaaggcttacaagaggagcaagcgccag
acgctgagggaggctcgcatgaccgagaaactggagaaacagcagaagatggagcaggag
aggaaacgcagacagaaacaccaggagtatctgaacagcatcctgcagcatgccaaggac
tttaaggactaccaccgctctatcactgccaagatgcagaagcagaacaaggccatcacc
acctggcacactaacacagagagagaacagaagaaagagacagagaggattgagaaggag
aggatgaggagactcatggcggaggatgaggagggctacaggaagctgatcgaccagaag
aaggacaagcgtctggcgtatctgctgcagcagactgacgagtacgtagctaacctcact
gacctagtctacgaacacaaggctgcacaggcagccaacatgaagaagaagaagaagaag
cagaagaagaagaatattgatgagagcggggaagggatgagtggcatcgggcctgacggg
gagcccatggatgagagcagtcagatgagtgagctgccagtcaaagtgatccagacagaa
acagggaaggttctgcaggggctcgacgcccccaagtcctcacagttggaggcctggcta
gagatgaaccctggatatgaagtagccccaaggtcagacagtgaggagagcggctcagag
tttgaggacgaggatgaagaggaggtcccaggagtgtccagccggccagactctcagtct
gaggagaagaagatcatcaatcccaacagtggcgagttcccagagaaagtaaccaagcac
attatcgagtctgcaaagcaggatgttgatgatgagtacacggtgccagagactgaactg
accatcttccagcagtcctactacggtgtggctcacgccatcattgagagggtcgacaaa
cagtcttcgctgctcatcaacggcatgctcaaacactaccaggtgcagggtctggagtgg
atggtgtctctgtacaacaataatctgaatggtatcctggctgatgagatggggctgggc
aagaccatccagaccatcgccctcattacatacctcatggaacacaagagactcaacgga
ccctacctcatcatcgttccactatcgactctgtccaactgggtctatgagctggataaa
tggtctccgtccgttgtgaagatttcctacaaggggacccctgctatgagacgaggcctg
gtggctcagctccgcagcgggaagttcaatgtcctcctcaccacctacgagtacataatt
aaggacaaacagatcctggccaagatccgttggaagtacatgattgttgatgagggtcac
cgtatgaagaaccaccattgtaagctgacccaggtgttgaatacccattacgtagcccca
cggcgcctcctcctgacgggcacgccactgcagaacaagctccctgagctctgggccctg
ctcaacttcctgctgccgaccatcttcaagtcctgcaacactttcgagcagtggttcaat
gccccctttgccatgaccggggagagggtggacttgaatgaggaagagacaatcctgatt
atccgccgtctccacaaggtgctccgccccttcctgctcagacgactcaagaaggaggtg
gagtcccagcttccagagaaggtggagtatgtcatcaagtgtgatatgtcggccatccag
agggttctgtaccgtcacatgcagggcagaggaatcctcctcaccgatggatcagagaaa
gacaagaagggtaaaggaggagcgaagaccctgatgaacaccatcatgcagctgaagaag
atctgcaaccacccctacatgttcccacacattgaggagtcctttgctgagcacttaggc
ttcccgaacggcgttataagcggacacgagctgtaccgtgcatcggggaagtttgagctg
ctggaccggatccttcccaagctgcatgtcaccaaccacagagttctgctgttctgtcag
atgacatcactcatgaccatcatggaggactactttgcttaccgcaatttcctctacttg
cgcctcgacggcaccaccaagtctgaggaccgtgcggcgctgctgaagaagttcaatgag
aaaggttcccagtactttgtgttcctactgagcaccagagccgggggactgggcctcaac
ctgcaggctgcggacactgtggtcatctttgactctgactggaaccctcaccaggacctc
caagcccaggacagggctcatcgtattggtcagaagaacgaggtgcgtgttctgcgtctg
tgtacggtcaacagtgtggaggagaagatcctagcggctgctaagtacaaactgaacgtg
gaccagaaggtgattcaagccgggatgtttgaccagaagtcctccagccacgagaggaga
gcctttttacaggccatactggaaacagaagagcagaatgaggaggaagacgaggtgcct
gatgatgagactctgaaccagatgatcgcccgtaatgaggatgagtttgagctgttcatg
agtatggacctggaccggcggcgggaggacgccaggaaccctaaaaggaagccacgtctg
atggaggaggatgagctgccatcttggatcgtcaaggatgacgcagaggtggagcggctc
acttgcgaggaagaggaggagaagatcttcggccgaggatcacgcaggagaggcgacgtt
gactacagcgacgccctgacagagaaacagtggctcagggcagtagaggatggtaacctg
gaggaaatggaggaagagatccgtctgaagaagtcgaggaagaggaggagacgaggggag
aaggacggagggagggaagagggaggagagaaggcaaagaagaggcgtggacgtccccct
gccgagaagctgtcccccaacccccccaaactcaccaaacagatgaacgccatcatcgac
accgtcatcaactacagagacaggtctaacagacagctgtcagaggtgtttgtccagctg
ccgtccaggaaagagctgccagagtactacgagctgatcagaaaacctgttgacttcaag
aaaatcaaggagcgtgtgcggagccacaagttcaggagtgtgtctgacctggagaaggat
gtgatgctgctctgtcacaacgctcagacttttaacctggaggggtcacagatctatgag
gactccatcgtgctccagtctgtgtttaagagtgccagacagagaatcataaaggaggag
gagagtgaagaggacagcgatgatgacgatgatgatgatgatgatgatgatgaggaagag
tcggaggcagagtctaattcagtgagggtgaagataatgctaggtaaggagtgtggcggt
agcagcatcggagcccgtcaccataacaaggacaaaggcaagaagagactgagtcgctcc
aaggccaaacctgtcgtcagtgacgatgacagcgacgaagatcaggatgacaacaatcag
tctgaggagagcagaagtgaagatgagtga
DBGET
integrated database retrieval system
