Oncorhynchus tshawytscha (Chinook salmon): 112235593
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Entry
112235593 CDS
T05605
Symbol
acin1b
Name
(RefSeq) LOW QUALITY PROTEIN: apoptotic chromatin condensation inducer 1b
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03015
mRNA surveillance pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112235593 (acin1b)
09122 Translation
03013 Nucleocytoplasmic transport
112235593 (acin1b)
03015 mRNA surveillance pathway
112235593 (acin1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112235593 (acin1b)
03041 Spliceosome [BR:
otw03041
]
112235593 (acin1b)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112235593 (acin1b)
Spliceosome [BR:
otw03041
]
Complex C
Other components
EJC/TREX
112235593 (acin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
112235593
NCBI-ProteinID:
XP_024259823
LinkDB
All DBs
Position
LG10:18634180..18665376
Genome browser
AA seq
1430 aa
AA seq
DB search
MADEDVTLDGKSLQSLRVADLKAALEHRHLPKSGAKNALIKRLKGALMLENVKKTSTSHI
GLQPNSQIGEEMSQNSFIKQYLAQQQELLRQRLEREAREAAEVDGETGPEEDEDEEEEDT
EQDNDSASYHPDKHCPIPSQPPLTRAEEGGGGGTMMMGQGMMSQGMGKGTMSRRPHFGPG
SVPQESPDAPGSWTQQRLSLHTGLRHEELTTPSPPRAVASLSVRVLGDPERQGLPPSMPP
RVQAQENEGTAPADDDRPAHYVLHLSRSARAAASAGGNRVQEDSDDDDSSEEDEDEWGPA
AGARRGVGGGGRGRSPPPRPQQPSPSIPVGRERSRRKLQPPQHIPPQQVVHQPPMQLRQP
TPPPXPPPELSFPLPDTPKQSPPDMDEEPEGAGVAVRSPPGGLQRHDSDSSSRSSSPEPL
AQRRPGPLSLLARKMASEGAFGKRGEGASDGQTGPGGESSGSGDGGSIVPGAGPGVGVVL
FPGAAITHIGGSSAAHSGTVPVPEVPAPVSMFGSGAQFHPLSLVSGAAVPGITLTVEPQG
TSGGTAQKRTEKEEKQVESESCLPPWKHGRDVTSVSLPFGSGGSEVPAVHQGDSPKKSPF
GRDEPLSSPPGSTTCLPALAPKKPRMFSDTSSGSMASPPKPGQQGSVVVTTPGEPPLKQE
VLVSGAQQDTDNTIEVTSPNKASAEKPGGKTGGEIVKMEKESESQAEKATPKAAGETRRR
GPEEAVEVEPMGPALPPSYPGKGEEEKKRKEDVRKKEEERCRQRKRASDRRSSPSSGGDS
SSSDSDSGSSSSHSSGSTSSRDKKKKSVPGKERGDERRRLGKGGEKKQPSREKKQSSLSE
PSGPGPMEVERPDPEDSRAPQPTPEGDPENSEGCMEESTTPKALATRNISLTSSKTSPEG
AGEAESGTAAGRKRRWGSCTAVTTKKPSISITTDSLKSLIPDIKTSQEAVMDLHPDDSQL
SGDEDTTTTREDQGLDKDLKIRRTVTQVVPGESHENGRGEREEEEEEENKRERERTHKEK
RKNSYSKDGMVCQSSTTHDANAKKVTPSDTLVRRSISQQKSGVSVTIDDPVRTDKLPSPP
RGKVSNIVHVCNLVRPFTLGQLKELLNRTGSVVEEGFWIDKIKSHCYVTYSSSEEAVATR
AALHRVKWPQSNPKVLSVDFCEQNELDFHRGLLTVDPREEHRPQTAVGPGGPKVRPGGLP
PLMPERDGRVDRGAVGGVRDQWAEREREMERRERTRAEREWDRDKVRDFGGKPGEERERG
RRSRSLDRERRRKEREGKEKKIDKKDEPPVKLLDDLFNKTKAAPCIYWLPLTEEQANQRG
KEREERQKERERRRKEQQEEEDKKREEEKERMKSKEEGGAAVSTGGGSVRGSEGNRDREG
ERGRDREGERGRDGDKRKDIGGFKPKGPDVKPLPGFRHSRSRSNLRDRRR
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgaagatgttacgctggatggtaaatcgctacaatcgctccgtgtggcggat
ttgaaagccgctttggagcatcgacacctccctaaaagcggggcaaaaaatgcgctcatt
aagcgactgaagggggctctgatgttggaaaatgttaagaagacttccacttcccacatt
gggcttcagcccaactcccagattggggaggagatgagccagaacagcttcataaagcag
tacctggctcagcagcaggagctccttcgccagaggctggagagagaggcccgggaggcg
gcagaggtcgatggggaaacaggcccagaggaggacgaggacgaggaggaggaggacaca
gagcaggacaacgacagtgcttcctaccatcctgacaagcattgccccataccctctcag
cccccactgacccgggctgaggaaggaggtggaggagggacaatgatgatggggcaagga
atgatgtcccagggtatgggcaaagggacgatgtctcgcagaccacactttggcccaggc
tccgtgccccaggagtcccctgacgcccctggctcctggacgcagcagcgtctctcactc
cacactggcctccgccacgaggagctcaccaccccctcaccaccccgcgctgtggcctcc
ctgtctgtgcgtgtcctgggggaccccgagcgccagggcctgccaccctccatgcccccc
cgcgtccaggcccaggagaatgaaggcaccgccccggcggatgacgaccgacccgcccac
tatgtgctccacctcagccgctccgctcgggcagcagccagcgccgggggtaaccgcgtc
caggaagacagcgatgatgatgacagcagtgaggaggacgaagatgagtggggacctgcg
gcgggggcaagaagaggggtcggtggcggtggaagaggacgttcccctccccctcggccc
cagcagccttcccccagcatcccagtgggccgagagaggtccagacgcaagctccagcct
ccgcaacacatcccccctcagcaggtagtacaccagccccccatgcagctccgccagccc
accccgccccctncccctcctccagagctctcctttcctctacccgacacccccaagcag
agcccgcccgacatggatgaggagccagaaggagctggggtagccgtccgctcccctcca
ggtggcctccagaggcacgactctgactccagctcccgctctagcagcccagagcccctg
gcccagcggcggcccggacccctctccctgctcgcccgcaaaatggcttccgagggagca
ttcgggaagagaggtgagggtgcctcagacggccagacaggtcctggtggggagtcatcc
ggatcaggagatggcggtagcatcgtcccaggagcaggaccgggggttggggtagtcctg
ttccctggggctgctatcacccacatcggaggcagcagcgcagcgcactccggaaccgtc
cctgtacccgaggtccctgcaccagtgtctatgtttggatcaggggcccagttccatcct
ctctctctggtgtctggagcagctgtcccaggcatcaccctcaccgtggagccccagggt
acatctggagggacggcacagaagagaacggagaaagaggagaaacaggtagagagtgag
agttgcctgccgccatggaagcacggacgggatgtgacgtctgtgtccttgccgtttggg
tctggggggtcagaggtgcctgcggtgcaccagggggacagcccgaagaagtcacccttc
ggcagggatgaacccctctcctctcctcccggctcaaccacctgtctgcctgctctcgcc
cccaagaagccccgcatgttctccgacacctcatccggctccatggcatcccctcccaaa
cctgggcaacaggggtctgtggtggtgaccacgccaggggaaccccccctcaaacaggaa
gtcctcgtctcaggggcccagcaggacacagacaacaccatagaggtcacctcaccgaac
aaggcgtccgcggaaaagcctggagggaaaactggaggagaaattgtaaagatggagaag
gagagtgaaagccaggcagaaaaggcgacaccgaaagccgccggcgagaccaggagaaga
ggacctgaagaggctgttgaggttgagcccatggggcctgctctgcccccctcttaccct
ggtaagggagaagaagagaagaagcggaaggaagatgtgaggaagaaggaagaagagcgg
tgcaggcagaggaagagggcgagcgacaggaggtcgtcgccctccagcggcggcgactct
tcatcctccgactcggattctggatcctcttcatcacattcctctggctccacctcctcc
cgggacaaaaaaaagaaatctgtcccgggaaaagaaagaggggatgaaaggagaagactg
ggaaaaggaggagagaagaaacagccttccagggagaagaagcagtcttccctgtcggag
ccgtccggccctggccctatggaggtggaaaggccagacccagaggactccagggccccc
cagcccacccccgaaggggacccagagaacagtgagggctgcatggaggagagcaccact
cctaaagctttggccacacgcaacatctctttaaccagcagtaagacgtctccagaggga
gcaggagaggcagagtctgggaccgccgcggggaggaagaggaggtggggatcctgcacg
gccgtcaccaccaagaaaccctccatcagcatcaccacagactctctgaagtctttgatc
ccagacatcaagaccagtcaggaggctgtgatggatctccacccagacgacagccagctg
tctggggacgaggacaccaccaccaccagggaggaccagggcctggacaaagaccttaag
atcagacgcaccgtcacacaggtggtcccaggtgaaagccatgagaatggccggggagaa
cgagaggaggaggaagaggaggagaataaacgggagcgtgagaggacacacaaagagaaa
cgaaagaacagctactcaaaagatggcatggtgtgtcagtcctccacaacacacgacgcc
aacgccaagaaagtcactcccagtgatactctggtgcgtcgctccatcagtcagcagaag
tctggtgtgtctgttaccatcgacgatccagtccgcacagacaaactgccctctccgccg
agaggcaaagtctccaacatcgtccacgtctgtaacctggtgcgacctttcaccctgggc
cagctgaaggagctgctgaacaggacaggctctgtggtggaggagggcttttggatcgac
aagatcaaatctcactgctacgtcacttactccagctcagaggaggctgtggccacacga
gctgctctgcacagggtgaagtggccccagagcaaccctaaggtcctcagtgtggacttc
tgtgagcagaacgagctggacttccacagaggtctgctgaccgtggaccccagagaggag
caccggccccagactgccgtgggtcctggaggtcccaaagtccgaccgggggggctgccc
cctctgatgcctgaacgggacgggcgcgtggaccgcggggctgtcggaggggtgcgggac
cagtgggcggagagagagagggagatggaacgccgggagaggaccagggcggaacgcgag
tgggaccgggacaaggtgcgagactttggaggcaaaccaggagaggagagggagagaggg
aggagatctcgctccctggatagagagaggaggcgaaaggagagggaagggaaggagaag
aagatcgacaaaaaggatgaacctcctgtcaaactactagacgacctcttcaataagacc
aaagcagctccctgtatatactggcttcccctcactgaggaacaggcaaaccagaggggg
aaggaacgggaagagcgacagaaagaacgagagaggaggcggaaagaacagcaggaggag
gaggacaagaagcgagaggaggagaaggagagaatgaaaagtaaagaggagggaggcgct
gcggtcagcactggaggtgggagtgtccggggatctgagggaaacagggacagagagggg
gagcgagggagggacagagagggggagcgagggagggacggggacaagaggaaggacatt
ggtggtttcaaacccaaaggtcccgatgttaaacccttgccggggttccgacactcccgc
agccgtagcaacctccgagacagacgccgctga
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