Oncorhynchus tshawytscha (Chinook salmon): 112235640
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Entry
112235640 CDS
T05605
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112235640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112235640
Spliceosome [BR:
otw03041
]
Complex A
U1 snRNP components
U1 related factors
112235640
Complex B
112235640
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
AmyA-A_glucT_m
DUF4936
Motif
Other DBs
NCBI-GeneID:
112235640
NCBI-ProteinID:
XP_024259890
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All DBs
Position
LG03:complement(41154599..41188198)
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AA seq
894 aa
AA seq
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MSSDDNNGQSQAPSFAGVPPSGMPPPFMGPPGMPPHYPPMGMPPMGQRPPNMAPMPPGMM
PPGMMPPMGGPPMGQMPGMMPPMMPGMMMPPRMPAATMQPTGPPGVDTTVIAMPGTVGTT
NGSPQDDQPKNKSVWTEHKSLDEKTYYYNTETKQSSWEKPDDLKSPAEQMLSKCQWKEYK
SDNGKAYYYNSHTKESRWTKPKELEDLEAMIKAEENGMAEVGAPGTVIITPNLQLDSAAT
MATMMMEMPAMRPAPTVSVEQMSLVPMLVAEVNADSPVNSTEDLAGMEASASNDASKEER
PELVKKTYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKMIINDPRYSALPKLSEKKQA
FNAYKVQTEKEEKEETRIKYKESKEMYQRFLENHEKMTSTTRYKKAEQMFAELDVWSTVP
ERDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDN
PTFAEDEELQNMDKEDALICFEEHIRALEKEEDDEKQKTLLRERRRQRKNRESFQKFLDE
LHDNGQLHSMSAWMEMYPTVSSDIRFANMLGQPVYGVYSAGSTPLDLFKFYVEDLKARYH
DEKRIIKDILKDKNFLVEVNTSFEDFGTVISSDKRATTLDAGNIKLAFNSLLEKAEARER
EREKEEARKMKRKEATFKSMLKQATPALEPEATWEEVRERFLKESAFEDVTLESERKRIF
KDFMHVLEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEGEDDYHTKKKKRSQSKSP
SERSSSGESDRSYKKSKKHKKKGKKRRHKSQSPESEGERKEKGGRERDGKREKDQEKEKE
NDKSRGKSRSESKQKSPKRKSTKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagatgataataatggccagagccaagcaccttcttttgctggggtcccaccc
tcagggatgccaccgccttttatgggaccaccaggaatgccgcctcattatccaccaatg
ggaatgccacccatgggacagaggcctcccaacatggctcccatgccacctggtatgatg
ccacctggcatgatgccaccaatgggagggccacccatgggacagatgccaggcatgatg
ccacctatgatgcccgggatgatgatgccacctcgcatgccagctgcgacgatgcagcca
acaggaccgcctggagtggacacaactgtcatcgctatgcctggaacagttggtaccaca
aatggctcgccacaggatgaccaaccaaagaataagtctgtgtggacagaacataagtcc
ctggatgagaagacctactactacaacacagagaccaagcagtcttcctgggaaaagcca
gacgacctgaaatctcctgcagaacaaatgctgtctaaatgccaatggaaggagtacaaa
tcagacaatgggaaggcgtactactacaactcccacactaaggagtcccggtggaccaaa
cccaaagagcttgaagatctggaagccatgataaaagctgaggagaatgggatggcggag
gtaggtgctcctggcactgtcatcatcacccccaaccttcagctcgacagcgctgctacg
atggcgaccatgatgatggaaatgccggccatgaggccagctccaaccgtctcagtggaa
cagatgtccctggtgcccatgcttgtagctgaggtcaacgctgactcgcctgtcaactcc
acagaggacttggccggcatggaggcctcagccagtaatgacgcctcaaaagaggagagg
ccagagctggtgaagaaaacatacaagtggaacacgaaagaagaggccaagcaggccttc
aaagagctcctgaaggagaagggcgtttcatccaatgcgtcttgggaacaagccatgaaa
atgatcatcaatgacccgcgctacagtgctctgccgaagttaagtgagaaaaagcaggcc
ttcaatgcttacaaggtgcagacggagaaagaggagaaggaggagactaggatcaagtac
aaggaatccaaggaaatgtatcagcgatttttggaaaaccacgagaaaatgacatctaca
accagatataagaaagcagagcagatgtttgcggagctcgatgtgtggagcaccgtccca
gagagggacagactggagatctatgaagacgtcctgttctacctagccaagaaggagaag
gagcaagccaagcagctgaggaagaggaactgggaggctctgaagaacatcctggacaac
atggccaacgtgacgtaccgcaccacctggtccgaggcccagcagtacctgctggacaac
cccaccttcgcagaggacgaggagctccagaacatggacaaagaggacgctctgatctgt
ttcgaggagcacatccgagctctggagaaggaggaggacgacgagaagcagaagacactg
ctgagggagaggaggagacagcgcaagaacagagagtccttccagaaattcctggacgag
ctccatgacaacggtcagctccactccatgtctgcgtggatggagatgtaccccaccgtc
agctcagacatccgcttcgccaacatgctgggccagccagtttatggtgtctattccgca
ggctccactcccctcgatctgttcaagttctacgtggaagacctgaaggctcgctaccac
gacgagaagcggatcattaaggatatcctgaaggacaaaaacttcttggtcgaggtaaac
actagctttgaagactttggcactgtgatcagctcagacaagagagccacaacgttggac
gcaggcaacatcaagctagccttcaacagcttgctggagaaggcggaggctcgggagagg
gagcgggagaaggaggaggccaggaagatgaagaggaaagaggctaccttcaagagcatg
ttgaagcaggctaccccagccctggaaccagaggccacctgggaagaagtccgagaaaga
ttcctcaaagaatctgcattcgaagacgtgactctggagtctgagaggaaaaggatattc
aaagacttcatgcatgtcttggagcacgagtgccagcatcatcactccaagaccaagaaa
cactcaaagaagtccaagaagcaccacaggaagcgctctcgctctcgatcgggctcagag
tctgaaggtgaagacgattatcacaccaagaagaagaagcgctcacagtccaagtccccg
tccgagcgttcctccagtggggaatctgatagaagttataagaagtccaagaagcacaag
aagaaggggaagaagaggcgtcacaagtcgcaatctcctgaatccgaaggcgagcggaaa
gagaagggaggaagagagagggacggcaagcgggagaaggaccaggagaaagagaaagag
aacgacaagtcccgggggaagagtcgctccgaatccaagcagaagtcacctaaaaggaaa
tctaccaaggaggagggtggctgggacacttcaggcagcgagctgagtgaaggagagctg
gagaagaggaggaggactctactggaacagctggatgctccttga
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