Oncorhynchus tshawytscha (Chinook salmon): 112235686
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Entry
112235686 CDS
T05605
Name
(RefSeq) serine/arginine-rich splicing factor 1B-like
KO
K12890
serine/arginine-rich splicing factor 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
otw05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112235686
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
112235686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112235686
Spliceosome [BR:
otw03041
]
Common components
Common spliceosomal components
SR proteins
112235686
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_3
RRM_7
Nup35_RRM_2
CoV_nucleocap
Motif
Other DBs
NCBI-GeneID:
112235686
NCBI-ProteinID:
XP_042165187
UniProt:
A0AAZ3RHQ5
LinkDB
All DBs
Position
LG30:52851943..52869314
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AA seq
255 aa
AA seq
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MSGDNMSGGGSVVRGPAGNNDCRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGP
PFAFVEFEDPRDADDAVHGRDGYDYDGYRLRVEFPRSGRGGGRGGMGGGRGGGDGGGPRG
RYGPPSRRSEYRVIVSGLPSSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTY
AVRKLDNTKFRSHEVETAYVRVKVDGPRSPSYGRSRSRSRSNGRSNSRSRSFSPPRRSRA
SPRYSPRHSRSRSRT
NT seq
768 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggggataatatgtcgggcggcgggagcgtggttcgtggcccagcgggaaacaac
gactgtcggatctacgtgggtaacctgccgcctgatattcgcactaaagacgtggaggac
gtgttctacaagtacggagcgatccgggatatcgacttgaagaaccggagaggaggaccg
ccgttcgctttcgtggaattcgaggaccccagggatgctgatgatgcggtgcacggtcgt
gatggttatgactacgatggttaccgtctccgggtggagttcccccgtagtggtcgtgga
ggggggagaggggggatgggcggtggaaggggcggtggtgacggtggaggacccagagga
agatatggacctccatcacgacgctctgagtaccgggtcatcgtctccggtctcccctct
agtggtagctggcaggacctaaaggaccacatgcgcgaggcaggtgatgtatgttacgct
gacgtgttccgggacggtaccggcgtggtggagttcgtacgcaaggaggacatgacctac
gctgtccgcaagctggacaacaccaagttccgctcccacgaggtagagactgcctacgtg
cgtgtgaaggtggatggacctcgcagccctagttacggacgctcccgctctcggagccgt
agcaacgggcgtagcaacagccgctcacgcagcttctcaccgccgcgacgcagccgggcc
tctccacgctactcgccacgacactcacgctcccgctcccgcacctag
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