Oncorhynchus tshawytscha (Chinook salmon): 112235711
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Entry
112235711 CDS
T05605
Symbol
pdzd2
Name
(RefSeq) LOW QUALITY PROTEIN: PDZ domain-containing protein 2
KO
K24058
PDZ domain-containing protein 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112235711 (pdzd2)
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
112235711 (pdzd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
112235711
NCBI-ProteinID:
XP_042177175
LinkDB
All DBs
Position
LG04:2482743..2612338
Genome browser
AA seq
2594 aa
AA seq
DB search
MPITQENALSHLPLLEDWLLGIQTRDQQSTISRDPDQDSYQESEHEVDACGTVSDSTSGD
MSLCQASIQKLMEYIQLNFTEDKEPNVVARPTMPGGGVDAEVRAVCLTKREGDGAELGLS
FGNIPIFGDPEGENRKKGGGRRRRKGDQGPVLDVGCIWVTEVRKRSPAARCGRIKLRDEL
LSLNGQLMVGVDVTGASYLADQCWNGGCIYLIMLRRIKRKAPLPPCNGNSKVTNSGGSAH
SLDNLSGISSEPPSSLLTQNGDGKRLRKFGVISRSSLNRDSTDGKDGSCDDGGRVAVENG
YHGYRGSTVSMEMEVTLPEGRPGRKDEGPMTVLPPLAIPRNLLNSGGTATLPNRSHRGLS
EHKTESFSSDTSSQVRQTAIQHPERGSRIWHMHMVKGQEGLGIQITGGRHTQAYGIIHAH
IEEGGATQRDGRLKAGDELLMINGQSLVGLSHSEAVAVLRSSTGLVQLVVASREESEVDF
HRYPSTSLPDLVSTSSSSPSPSNNMEPRHGLTSSSLSLPTTLTDLEKLEDRGQMEGPKGT
CRSPTSMKFRTRSQGGGSRLESVGEDDELIVENGEEGSDMVEKPTRGGRKHSLPQQLDTV
GVRQEYQIVKKSARSLSTVQNVESPWREMWPSRNAIISNIVLMKGQGKGLGFSIVGGQDS
ARGRMGIFVKTIFPNGAAVADGRLKEGDEILEVNGDSLQGLTHQQAIQTFKQLKKGVITL
TVRTRLRSPSLTPCPTPTLLSRSSSLNSNASGGTPIPSTFNETPEVRKGPPRPGPKDRII
MEVTLSKEPGVGLGIGACCLTLENSVPAIYIHSLAPGSVAKMDGRLSRGDQVLEVDSVSL
RHVALSEAYAILSECGPGPVSLIISRHPNAKVSEQEMDDVISQSTHRDSLSKEGHVSQTL
GLPSKSPSPTVKAKQGDGSSLSWTMKRFLEPASRQGSLSSEAELSQYFSQEVTSHSSLSE
TMAMCSSDDDMLNHRSCNTTPTQPHVEVGAHGDPVVNQPAEANQPSVGSPGSGAVRSPLL
RQRRVICYEEEISDDDDDEDDAVTPPVHRMAGRGTTPVVLADSGTVIATSSVEVDEGSLS
PLYGISLGSEEGVGEGGSSPTTGPSNLGVRKDLQGPLEPKRSPKLEHKAVTRVKSMMSIE
AQPTNQQNQRTKGEESPTSPSSQFLAPQPGVGSSCSLGRPGSNPNPLCKKGEACSELAGV
CTIDKVVLRRSEEESFGLDLEIKSSPLKVVITGLRPGGAAERESRGRMCVGDEIISIGET
PVGSSSYHDVCELMHNLPVTLRLEVKRPVSAVDRLSSLMMSSGSCDVIEPSVLDQSRTSQ
EANGGYPNPGIPSSSSSSSSSSATNHNFKPTAPTNHSSEIPVTYIDDVITELSSSDVESV
LSSKTPKAPSEAQCTETTSCKSALDSKALPEKDNSNVQTPPTRPSQLDFSVLDSGNNGRL
LPVGKTFLNNYSRNFSSNLTDEGKNALSNGVEKPPGASAASKCHMYNLVDDSDSESEDTV
TDNSHGTAGDNKPGSRVVGAEPQDTDSDEEEVEICYSESQRPSTLSQAALTHPTDGPLSP
RLSIPISGSDGSHNTKESGPFDVVLDSAASATSNAAMTAATHPAAASQQNKDCSVVTTTQ
SNPITSPSLSQSLSGSQSSGVCLTAESKASPCQMVHPQSSKDTDSVPTPGPARSSECFAN
GVSGSNFATPVIKPSQATSVVAATQSLTPRSQERTARPTSGKLSNSTSSSSSSSAVSHST
AAKAMPSNYSRSGSSRPSLTTTRDKKGEKVSLEPRLVQNNPTSLPMSKLKGLSIKSKNKT
QQQLSPKPASAESPAVLRKASKTSPLQSPKLQAKKVDSPLLTRKAAASSSSLKTGKQLDL
SRISSRSLTSLKAGDRTQDKCNPKSNPTTTTTLEAAQSAKLELHTNKEEQVTSATATSKE
QPESVPTTQRSFIEVRLSSSSSTLPSSSSSTPVLMRKETVNSKNYSITQTTHISDITSHV
NGSAVETNLRPAAPDSVCNPENITTNDSAVNSIGLESVDVVPLPINNGIINISLGNSCLT
DMAVENLKANKSKLKMMERRSFSTDNSTPGDPNPFSVRQRIKSFENLASFDKPALKCIEI
QSFAQSYALTATLKPPLNRRLSGYMSGSVNSIDCRSLRRSFSSCVDNFNVSTPLTPLSPQ
LRKSPSNLTLPNFDILTQSCSTNEAPLGQTRDELADGEISKMLPPGVTLTPQTPPVMRHR
QARGHANLSRSRLRELRAISMPDLDKLYTDDFSSNPGTNGTFKTELEIHPARFTEALQNQ
SGCCQLPAEPTGVPPTRASRSDGGASQDAIQGETNGQTDLSSWSISLTVLAGSPVEQSKL
QTVLASLTSKTDVLALLQEAKALSQVKDDTHFVVFSKEEGSGLGFSIAGGVDLEQKSISV
HRVFSKGLAGLEGTIQQGDSVLSINGSSLEGTSHGEALSCLHQARLSSQALVVFRRGKDS
EGHMSPRHHDLYHRTGRSYSPGCRDNGPETARPVVVEMGPDGALRIQLLKTSAGLGFSLE
GGKASVHGDRPLNVKRVFKGGAAELSRVVDVGDEVLEVNGSSLQGLMHYDAWNIIKTVSK
GPVQLVIRKPRTSV
NT seq
7785 nt
NT seq
+upstream
nt +downstream
nt
atgcccatcacccaggagaacgccctgagccacctccccctgttggaggactggctcctg
gggatacagaccagggaccagcagtccaccatcagcagagacccggaccaagactcttac
caggagtcagaacacgaggtggatgcctgcggcacggtcagcgacagtaccagtggagac
atgtctctatgtcaggcctctatacagaaactgatggagtacattcagctcaacttcacc
gaggacaaagagcccaacgtcgtggcacgacccacaatgccgggcggaggtgtggacgcg
gaggtgcgagccgtgtgtctcaccaagagggagggggacggggcagagctgggactgagt
ttcggtaacatcccgatattcggggatccggagggggagaacaggaagaagggaggaggg
aggaggaggaggaagggggatcagggacccgtgttggacgtggggtgtatctgggtgacg
gaggtgaggaagagaagtccggcggcgaggtgtggtagaattaaactacgagacgagttg
ctgtcactcaacggtcagctgatggtgggcgtcgacgtcacgggagccagttacctggct
gaccagtgctggaatggcggctgcatctacctgatcatgctccggaggatcaagcgcaaa
gcccctctccctccatgcaatggaaacagcaaagtcaccaacagtggtggctccgcccac
tccctggacaacctgagcggcatctcctccgagcctcccagtagcctgctgacgcagaat
ggcgatggcaaacgtttgcgaaagttcggcgtcatctcccggtcgtcgttaaatcgtgat
agtacagacggtaaggacggtagctgtgacgatggcggtagggtggcggtggagaatggt
taccacggctacagaggatccacggtatccatggagatggaggtcacgctccctgagggg
agaccaggaaggaaggatgaggggcccatgactgtcctgccccctctagcgatcccccgc
aacctgctgaacagtggagggaccgccaccctgcctaaccgctcccacaggggactgtca
gaacacaagacagagtcattcagcagtgatacctccagtcaggtaagacagacagccatt
cagcacccagagaggggcagtcgtatctggcacatgcacatggtgaaaggtcaggagggg
ctgggcatccagattacgggaggacggcatacacaggcatacggcatcatacatgcgcac
atagaggagggaggcgccacacagagggacgggcggctgaaggctggtgatgagctcttg
atgatcaacggtcagtctctggttggtctgtctcattcagaggccgtggccgtcctccgc
tcctccactggactggtacaactggtggtcgctagcagggaggagtctgaggtggatttc
caccgttacccatctaccagcctgccagacctggtcagtacttcctcctcctctccttct
cctagcaacaacatggaacctcgtcacggcctgacctccagcagcctctctctacccact
acgctgactgatctggagaagctagaggaccgtggccagatggagggacctaaaggaacc
tgccgttctcctacatccatgaagttcaggaccagatcacaagggggcggtagtcgtctg
gagtctgttggagaggatgacgagctgatcgtggagaatggagaggagggaagtgacatg
gtggagaaaccgacacgaggcggacgcaaacactccttgcctcagcagttagacactgtg
ggcgtccgacaggagtatcagatagttaagaaatcagctcgctccctgagcaccgttcaa
aatgtggagtctccatggcgtgaaatgtggcccagccgaaatgctattatatccaacatt
gtccttatgaaaggacagggcaagggactggggttcagcatcgtcggtggtcaggactct
gcccgaggaaggatggggatctttgtcaagactatcttccctaacggagcagcggtcgca
gacggacgactgaaagagggagatgagattctggaggtgaatggagactctctccaaggc
ctgacccaccagcaggccatccagaccttcaagcagctgaagaagggcgtgataaccctg
actgtgaggactcgtctccgcagccccagcctgactccgtgccctacccccaccctcctc
agtcgctcctcctcccttaactccaatgccagcgggggaacccccataccctccactttc
aacgaaacccccgaagtccgcaagggaccgcccagacctggccccaaggaccgcatcatt
atggaggttacactcagtaaagagcccggggtgggtctgggtataggggcctgctgtcta
actctagagaacagtgttccagccatctacatccacagtctggcccccggctctgtcgcc
aagatggatggacgactcagtcgaggggaccaggtgttggaggtggactcagtgagtctg
cgtcacgtggctctgagtgaggcctacgccatcctgagtgagtgtggacccggacccgtt
agcctcatcatcagccgacatcccaacgccaaggtttcagagcaggagatggatgacgtg
atcagtcagtccacacacagagacagtctgagcaaggaaggacacgtctctcaaacacta
ggcctgccctctaagagcccctcccccacagtgaaggccaaacaaggagatggctcctcc
ctcagctggaccatgaagaggttcctggagcccgctagcaggcaagggtcactgagttca
gaggcggagctatctcagtacttctcccaggaagtgaccagtcattcgtcgctgtcagaa
accatggcgatgtgctccagtgatgacgacatgctcaaccacaggagctgcaacaccacc
cctacacagccacatgtggaggttggggcccacggtgaccctgtggttaaccagccggcg
gaggccaaccaacccagtgtgggtagtcccggtagcggcgcagtccgcagcccgctgctc
cgacagagacgggtcatctgctatgaggaggagatcagcgatgatgatgatgatgaagac
gatgcagtgaccccgccggtccaccggatggctggtcgtggcacgacacccgtggtgctt
gctgactctggtactgtgatcgctacatcatcagttgaggtggacgagggatcgctctcc
ccgctctacggaatctctctggggtcagaggaaggggtcggggaaggagggtctagcccc
acgacaggccctagtaacctgggtgtgaggaaggaccttcagggccccctggagcccaag
cgctcccctaagctggaacacaaggctgtgacccgcgtcaagagcatgatgagcatcgag
gcccagccaactaaccagcagaaccagagaaccaaaggagaggagtctccgacctcccca
tcctcccagtttctggcccctcagcctggggtaggttccagctgctccttaggacggcct
ggttctaaccccaaccccctctgtaagaagggtgaggcctgcagcgagctggcgggggtc
tgcaccatcgacaaggtggtcctgaggaggagtgaggaggagtccttcggtctggacctg
gagatcaagtcttctcctctgaaggtggtgatcaccggactgaggcctggaggagcggcc
gagagggaatcccggggtaggatgtgtgtgggagacgagatcatatcgatcggggaaact
cccgtgggctcctcttcctaccacgacgtctgtgagctcatgcacaaccttcctgtgacg
ctcaggctagaggtcaagaggcctgtgtcagctgtagatcgcctctccagcctcatgatg
tcatcggggagttgtgatgtcatcgaaccctccgtactggatcagtccagaacttcccag
gaggccaatgggggttatccaaatccaggaattccctcctcctcctcctcctcctcctcc
tcctcagcaacaaatcacaatttcaaacccacagccccaaccaaccacagcagtgaaata
cctgtcacctacatcgatgacgtcataaccgaactaagttcctccgatgttgagagtgtg
ctctcgtccaaaacccccaaagccccttcagaagcacaatgtactgagactacatcctgc
aagtcagctctagacagcaaggccctgccagagaaagacaatagtaatgtccagactcct
ccaacacggcccagtcagttggacttctctgtcttggactctggaaacaatggtcgcctc
ttgcctgtgggtaaaacattcttgaacaattactccagaaactttagcagtaatctcaca
gacgaggggaagaatgctctttcaaacggggtggagaaaccacctggtgcctctgccgcc
tcaaagtgccacatgtacaacctggtcgatgacagcgattcagagagtgaagacacggtc
accgacaacagccatggcactgccggcgataacaaaccggggagccgcgttgtcggcgct
gagccacaggacacagattctgatgaggaggaagtggagatttgttacagtgagtcccag
cggcccagcactctgagccaggcagcgctgactcacccaacagatgggccattgtctccc
cggctctctatccctatctctggctctgacggcagccacaatacaaaggagtctgggccc
tttgatgtagtactagactctgctgcttctgccacgtctaatgctgctatgacggcagct
actcaccctgctgctgcctctcagcaaaacaaagactgctctgtggtaacaacaacccaa
tccaaccctatcacttccccctcgctgtctcagagtctatctggctcgcagtcctcaggt
gtctgtttgactgcagagtctaaagcttccccttgccaaatggtgcacccccagtcttcc
aaggacacagattctgtacccactccaggcccggcaaggtcttcagaatgctttgccaat
ggggttagtggcagcaactttgctacacctgtgataaaacccagccaggcaacttctgtt
gtagcagctacccaaagcctcaccccacggagtcaggagaggacagccaggccgacatca
ggtaaactatctaatagtacatcatcgtcatcatcatcatcagcagtatcccattcaaca
gcggcgaaggcaatgccctccaactatagtagatctgggtcatcgagaccatctctaaca
acgacaagagacaagaagggagagaaagtttccctggaacccaggttggtccagaataac
cctactagtcttccgatgtccaaactgaaggggctcagcattaagagtaagaacaaaacc
cagcagcagctttccccgaaaccagccagcgccgaaagtccggcagtcctcaggaaagca
agcaaaacttccccgctccagtcccccaaactgcaagctaagaaggtagactctcctctg
ctaaccagaaaggcagcagcctcatctagcagcttaaagacgggcaaacagttggatctg
agcagaatcagtagcaggagcctcacctccctcaaagcaggtgaccgaacacaggacaag
tgcaaccccaagtccaatcccacaaccactaccacgttggaggcagcacagtcagctaag
ttggagcttcacactaacaaagaggagcaagtgacatcagctactgctacgtccaaggaa
caaccggaatcagtcccaactacccagaggtctttcattgaggtgcgactctcatcttcc
tcttctactcttccttcctcctcatcgtctacgccagttctgatgcgaaaggaaactgtg
aattcaaagaattactcaattactcaaacgactcatatatcagatattacgtcacacgtc
aatggaagtgcagtagagaccaatctcaggcctgctgcccctgactctgtgtgtaatcca
gaaaacatcactacaaatgattcagcagtgaactcaataggcctagaatccgtagatgtg
gttcctttgcctataaacaatggtatcataaacatctctcttggaaactcctgtctaaca
gatatggctgtggaaaacctgaaagccaacaagtccaaactgaagatgatggagcgccgt
agtttctccacggacaacagcacccccggggatcccaaccccttctctgtccgccagagg
atcaagtccttcgagaacctggccagcttcgacaagccagcgctcaaatgtatcgagatc
cagtccttcgctcagtcctatgctctgacggcaacgttgaagcctcctcttaaccgaaga
ctgtctggttacatgtccggctcggtgaactccatagactgccgctcgctacgaagaagc
ttcagctcatgcgtcgacaactttaacgtctcaacccccttgacccctttgtcgcctcag
cttcgcaagtcgccgtcaaatctgactctcccgaactttgacattttgacacaaagctgc
agcacaaacgaagctccacttggacaaacacgggacgaactcgcggacggtgaaatctcc
aaaatgttgcccccaggggtgaccctaactcctcaaacgcccccggtgatgcggcaccgc
caggctcggggccacgctaacctgtcccgatctagattgagggagctcagggccattagc
atgcccgacctggacaagctgtacaccgatgacttctccagcaacccagggaccaacggc
acatttaagacggagctggagatccacccagccaggttcacagaggccctccagaaccag
tcagggtgctgtcaactgcctgctgaacccacaggtgtgcccccgaccagggccagtcgg
agcgacggtggggccagccaggacgccattcagggggaaaccaacggtcaaacagatctc
agcagctggtccatcagtttgacagtgctggctggctctccggtggagcagagtaagctg
cagacggtcttggcctcgctgacctccaagaccgatgtgttggccctgctacaggaggcc
aaagctctctctcaggttaaagatgatacccactttgtagtcttctccaaagaagagggt
tcgggacttggtttcagcatcgctggaggagtggaccttgagcagaagtctatatctgtc
catcgtgtcttctccaaagggctagctggcctggaaggtaccattcagcagggggacagc
gtcctgtccatcaacggcagcagtttggaggggacgtcccacggagaagccctgtcctgt
ctccaccaggctagactgtcctctcaggccctggtggtctttcgcagggggaaggacagt
gaaggacacatgtccccaagacaccacgacctgtaccaccgcacagggcgaagctactcc
ccagggtgcagagacaacgggcctgagacagctagaccagtagtggtggaaatgggtcct
gacggggctctgaggatacagctcctgaagacatcagctggtctgggcttcagtctggaa
gggggcaaagcctcggtgcatggagaccgccccctcaacgtcaaacgagtcttcaaaggt
ggtgctgcggagctgtcgcgggtggtggacgtgggggatgaggtactggaggtgaacggg
agctcgctgcagggcctcatgcattacgacgcctggaacattatcaagactgtcagcaaa
ggccccgtgcagcttgtcatcaggaaaccacggacctctgtataa
DBGET
integrated database retrieval system
