Oncorhynchus tshawytscha (Chinook salmon): 112235720
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Entry
112235720 CDS
T05605
Name
(RefSeq) cadherin-related family member 1-like isoform X1
KO
K16501
cadherin-related family member 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112235720
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Cadherin related
112235720
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
112235720
NCBI-ProteinID:
XP_042161529
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Position
LG24:complement(27153868..27181943)
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AA seq
894 aa
AA seq
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MKNQKKKRGFIFLLVFLVTLPPSLGRQTSDYAPYFYDKGPSSTNGNMALFSISEDTPVGT
QVYILNGTDPEGDAVWFGLTFEKGTREYLRVDPKSGNITLIQELDREKQGEISALVSITD
GRNKVAETIRVFVTDANDEEPEFQNLPFAVDVPEDTPAGSSIYRVQAVDKDMGSGGSVTY
YLQGTPTTKFTIDGHSGVLRIKPGETLDFETTTLHFVTVVAKDGGGQYKGKHQVLTSTAT
ITINVLDAQDTPPAFVGTPYFGYVYEVSVPGSEIATVFAKDGDEGNPNPIHYSITNGSED
VFTINSTTGCISLTTYPVTLRNELYEIKVKATELGPSEELLDYNAMTMVTVRVVDLNNHP
PTFYGENGPQSQFEVTMYEHPPEGEILRGLKITVNDSDQGANAKFKLRLVGPGRVLRVVP
QTVLNEAQVTVIIEDSAAIDYEKGKSLTYKLLAVEIDTPERFSATADIVIHLLDTNDNTP
RFTSEYYMARIPENSPGGSNVVSVTANDPDSGLWGEVKYSIYGSGSDLFLIHPSSGIIYT
QAWATLDAEVKSKYNFYVKAEDTEGKYSLAEVFVTVLDMNDHVPEFDDSFVERTMIIGAP
VRVEAIDADAESPNNVIEYSIMQAEPDNIFDINAETGEIKLKSYIKSMEIVQNITKQKDC
RWSLVVQARDRGSPSFSTTAVVNIDITEATQLKGPMAAFLLQSRHNPMKALGMVAGVISI
LVGVTVLISTAMFLRNTKSNRIMPARRIIIRRRPSRDRKPWTFNVPFRGGGGNDPLNKFV
VGDPEAGSVSINPNKNIRPRCSRSKPNPLPPRAPCLSPPSCPPLSSDPRPSERPRAAVPT
VSGALASKGSRRSSQSRESNISSETTRIPVSSALVSELKRRLEQKIIESNSSYY
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaccaaaagaaaaagagagggtttatttttctcttagtcttcttggttactctt
cctccctcgttgggaaggcaaacgtcagactatgctccctatttctacgacaaaggaccg
agcagcaccaatgggaatatggctctcttcagtatctcagaagacacaccagtcggaaca
caggtatatatcctaaatggcactgacccagagggggatgccgtgtggtttggcctgacc
tttgagaagggcaccagagaatacctgagagtggaccccaaatcaggaaacataactctc
attcaggaactagacagagagaaacaaggtgaaatctcagctctcgttagcataacagat
ggccggaataaggttgccgagacgatacgggtgtttgtcaccgatgccaatgatgaagaa
ccagagttccagaacctgcctttcgccgtagacgtcccagaggacactccagctggaagc
agcatttacagagtgcaagccgtggataaagacatgggctctggaggcagtgtcacctac
tacttacagggaactcctactaccaagttcaccatcgacggccacagtggggtcctgcgg
atcaaaccaggcgagacgctcgactttgagacgacaacgttacactttgtgacggtggtt
gccaaggatgggggcgggcagtacaaagggaagcatcaggtgttgacatctacagccacc
ataaccatcaacgtccttgacgcccaagacactcctccagccttcgttggaactccttac
tttggctacgtctacgaggtctcagttcctggttctgaaatagccactgtgtttgccaaa
gatggtgacgaaggaaaccctaaccctattcattactctattaccaatggtagtgaggat
gtcttcaccatcaatagcacaactggttgtatcagcctaacaacttatccagtcacgctg
aggaatgaattatatgaaatcaaagtcaaggccactgagctggggcctagcgaggagctg
ttggactacaatgccatgactatggtgacggttcgagtggtggatctcaacaaccaccct
cctaccttctacggagagaatgggccccagagccaatttgaggtgaccatgtatgagcac
cctccagagggggagatcctcagggggctgaagataacggtcaacgactctgatcagggg
gcgaatgctaaatttaaactgagattggtagggcctggtcgtgtactcagagtggtgcca
cagacggtcctaaatgaagcacaggtcaccgtcatcattgaagactctgctgccattgac
tatgaaaaaggcaaatccttaacatacaagttactggctgtggagattgacacccctgag
aggttcagtgcgacggctgatattgtgattcaccttttggacaccaatgacaacactccc
aggttcacctcagagtattacatggcacgtatcccggagaactcccccggaggctccaac
gttgtgtctgtcaccgccaatgatccagactctggcctttggggtgaagtcaagtactcc
atctatggatccggatctgatttgtttctcatccacccgtcctcaggcatcatctacacc
caggcctgggccactctggatgctgaggtcaagtccaagtacaacttctacgtgaaggca
gaggacacagagggcaagtacagcctggcagaggtgtttgtcactgtccttgacatgaac
gaccacgttccagagtttgatgacagctttgtggagaggaccatgatcatcggtgcacct
gttagggtagaggccatagatgccgatgcagagtcgcccaataacgtgattgagtattcc
attatgcaagctgagccggacaacatcttcgacatcaacgcagagactggagaaatcaag
ctgaagtcgtacatcaagtccatggagattgtgcagaacatcaccaagcagaaggactgc
aggtggtctctggtggtccaagcccgggaccgaggatctccatccttcagcactaccgcc
gtggtcaacatcgacatcactgaggcgactcaactcaaggggcctatggcagccttttta
ttgcaaagtaggcacaacccaatgaaggccctaggcatggtcgctggtgtcattagcata
ttggtaggcgtcactgtcttgatctccacggctatgttcttgcgcaacacaaagtccaac
aggataatgccggcgcgtcgcatcatcatcagacggagaccgtcaagagaccgtaagccg
tggacgtttaacgtaccattccgtggcggcggtggaaatgacccgttgaacaagtttgtt
gtaggcgacccggaagcagggagtgtcagcatcaaccccaacaaaaacatcagacccagg
tgctctagatcaaagcccaatcctctgccccccagagccccctgtctgtctcctccatcc
tgtccccctctgtcctccgaccccaggcccagtgagaggccccgggctgcagtgccgacc
gtctctggggccctggcttcaaagggctccagaagatccagccagagcagagagagcaac
atcagctctgagactactagaatccccgtcagctcagccctggtctctgaactcaaaagg
agactggagcagaaaatcattgagagcaactcaagctattattga
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