Oncorhynchus tshawytscha (Chinook salmon): 112235815
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Entry
112235815 CDS
T05605
Name
(RefSeq) POU domain, class 2, transcription factor 2 isoform X1
KO
K09364
POU domain transcription factor, class 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
112235815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112235815
03021 Transcription machinery [BR:
otw03021
]
112235815
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
112235815
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
Octamer transcription factors
112235815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pou
Homeodomain
POU2F1_C
HTH_31
Motif
Other DBs
NCBI-GeneID:
112235815
NCBI-ProteinID:
XP_042160893
UniProt:
A0AAZ3SID7
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All DBs
Position
LG23:complement(24090266..24131819)
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AA seq
606 aa
AA seq
DB search
MDFCNMWVPEIRMSKPVEVENTGADSPMESTDSERNGPDKNHQLQQMKISPFHLSPTLSS
NKNKMEECGEMSLGPPPHHNHAPSQTPLPHTQLMLTSSQLAGDIQQLLQLQQLVLVPGHH
LQSPQFLLQQHQGQQGLLSTPNLIQLPQQNQGSLLSAPRLGLQAQRDKAMEGSGVMTSVS
SVTSHPEEPSDLEELEVFARTFKQRRIKLGFTQGDVGMAMGKLYGNDFSQTTISRFEALN
LSFKNMCKLKPLLEKWLNDAETMSTDSTMPSPSSLSSSSMGFEGLPGRRRKKRTSIETNV
RVALERAFITQNQKPTSEEILCIADQLSMEKEVIRVWFCNRRQKEKRINPNSATPPLPSQ
LPQAPPTHKPPCYSPHMMSSQLSSQLSQAVTSLSTTLTTMSSFSPHTPSGPTHSSLSSAS
SPVTPPPPRSTASPAPPSHSTLSLNTGLWRLGKKNGDVSNYITDFAANLRNTVMGVNTGN
QALNQALLSNNPLATIQALAASGGQLPLSSLEGSSKVLLGGAGGQGGGLQSSFFLNHPAF
LHMGQNPGAGLVSAAVAKASQPSPFPSTSSISPTPCSPSPCSSPASSCDFNELAHSPSSL
GGAKIE
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggacttctgcaatatgtgggtaccagaaatcaggatgtcaaagccagtagaggttgag
aacacaggggctgactctccaatggagagcacagattcagagcggaatggtcctgataaa
aaccatcagcttcagcagatgaaaatcagtccctttcacctttctccaaccctcagcagc
aacaagaataagatggaagagtgtggtgagatgtccctgggccctcctccccaccacaac
cacgccccctcacagacgcccctcccacacacacagctcatgctgaccagctcccaactg
gcaggggacatccagcagttgttgcagctgcagcagttggttctggtgccaggacaccac
ctgcagtctcctcagttcctcctccaacagcaccaagggcagcaaggactactatcaaca
ccaaatctgattcagctacctcagcaaaaccaagggagcctcctgtccgctcccaggctg
gggctccaagcacagagagacaaggctatggagggcagtggggtcatgacctctgtgtcc
tctgtgacctctcaccctgaggagcccagtgaccttgaggaactggaggtgttcgcccgc
accttcaaacagagacgcatcaaactgggctttacacagggtgacgtgggaatggccatg
gggaagctatatggtaatgatttcagccagaccaccatctctcgcttcgaggccctcaac
ctgagctttaagaacatgtgcaaactcaaaccactactggagaagtggctcaatgatgca
gagaccatgtccacagacagtactatgcccagccccagctctctgtcctcttcctcaatg
ggcttcgagggcctgccgggccgacgcaggaagaaaagaaccagcatcgagactaacgtc
cgcgtggccctggaaagagccttcatcacgcagaaccagaagcctacctcagaggagatc
ctgtgtatcgcggaccagctcagcatggagaaggaggtgatccgcgtgtggttctgcaac
cgccgacagaaagagaagcgtatcaaccccaacagtgccacccctcccttgcccagtcag
ctcccccaagccccaccgacacacaaacccccctgctacagcccacacatgatgtccagt
cagctgtccagtcagctgtcccaggcagtgaccagcctcagtaccacattgaccaccatg
tcatcgttctcccctcatacccccagtggtcccacccactcatctctcagctccgcctcc
tccccagtgactcctcctcctcctcgcagcactgctagcccagcccctcccagccacagc
acactgagtctcaacacaggcttatggcgtttgggtaaaaagaatggtgacgtgtctaac
tacatcaccgattttgctgcaaacttgaggaacactgtgatgggagtaaacacagggaac
caggctctgaaccaagctctcctcagcaacaaccctctggctactatacaagccctagca
gccagtggtggccagctgcccctttccagtcttgaggggagcagtaaggtgttgctgggt
ggtgcaggggggcagggagggggtctccagtcctccttcttcctcaaccaccccgctttc
ctccacatgggccagaatcctggtgctggattggtcagcgctgccgtagctaaagcatcc
cagccctcccctttcccctccaccagtagcataagccccaccccctgctccccctcccct
tgctctagccccgcctcttcctgcgacttcaatgaattggcacacagcccatcctcgttg
ggaggggctaagattgagtga
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