Oncorhynchus tshawytscha (Chinook salmon): 112235908
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Entry
112235908 CDS
T05605
Name
(RefSeq) polypyrimidine tract-binding protein 1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112235908
03041 Spliceosome [BR:
otw03041
]
112235908
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
112235908
Spliceosome [BR:
otw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
112235908
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
112235908
NCBI-ProteinID:
XP_042152770
UniProt:
A0A8C8G4B6
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All DBs
Position
LG14:complement(3749933..3757763)
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AA seq
574 aa
AA seq
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MEGHKLDADLYPMGPGYVTDIDVSVGTKRGSDELFSSYIMTPANGNDSKKFKGEMRSPSA
PSRVIHLRQLPGDIQDSEVISMGMPFGKVTNLLMMKGKNQAFLEMNTVDQAQTMVNYYAT
VTPLIRQQPVFMQYSNHKELKTDNSPNQVRVQAALQAVNAVQGGTMLGSTMSGMGGVMGA
TMSVGGGEMGARGMATQSPVLRVIVENLFYPVTLEVLHQIFSKYGSVLKIITFTKNNQFQ
ALVQYADPMTAQHTKMSLDGQNIYNGCCTLRVSFSKLTSLNVKFNNDKSRDYTRPDLSTG
EQHNPQPGMDQHAMAAAAFGSPGLISASPYGHGFPQAFTLQQAAGLSMPGALASFGMGPG
GMAASRLGLQALGGGGGQAGVLLVSNLNPESVTPNCLFILFGVYGDVMRVKILFNKKDNA
LVQMADGTQAQLAMSHLNGVRLHGRSLRVSMSKHTTVQLPREGHEDQGLTKDYATSPLHR
FKKPGSKNYNNIYPPSGTLHLSNIPPAVGEEDLKALFSSSGASVTAFKFFQKDRKMALIQ
MSSVEEAVESLIEFHNHDLGENHHLRVSFSKSTI
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggaaggacacaagttagatgctgatctgtatcctatgggacctggctacgtcacagac
atagatgtctcagtgggtaccaagaggggatctgatgaactcttctcctcctacatcatg
accccagccaacggtaatgacagtaagaagttcaaaggtgagatgcggagccccagcgct
ccatcgcgtgtcatccacctgcgccagctgcccggggacatccaggattctgaggtcatc
agcatgggaatgccctttgggaaggtcaccaaccttctgatgatgaagggaaagaaccag
gcgttcctggagatgaacactgtggaccaggctcagaccatggtgaactactacgctacg
gtcacccccctcatcaggcagcagcctgtattcatgcagtacagcaaccacaaggaactc
aagaccgacaactcacctaaccaagtgagagtccaggcagcactgcaggcagtgaatgct
gtccagggtggcaccatgttgggctctaccatgtctggtatggggggtgtaatgggtgct
accatgtcagttggagggggagagatgggagccagaggcatggccacccagagccctgtc
cttagagtcatagtggaaaacctcttctaccccgtcacactggaagtcctgcaccagatc
ttctccaagtatgggtctgttctgaagatcatcaccttcactaagaacaaccagttccag
gctctggtccaatacgctgaccccatgacggcacagcacaccaaaatgtctctagacggt
cagaacatctataacggttgctgtactctgagggtgagtttctccaagctgaccagcctc
aatgtgaagtttaacaacgataagagccgtgactacaccagacctgacctttctactgga
gagcaacacaaccctcagcctggaatggaccagcacgcgatggctgctgccgctttcggg
tctccaggtctgatctcagcatctccttatggacacggattcccccaggccttcacttta
cagcaggctgcaggcttgtctatgcccggtgccttggcgtcattcggtatgggtccaggg
ggcatggccgctagtcgtctcggcctgcaagccctcggcggtggaggaggacaagctggc
gtcctattggtcagcaacctcaacccagagagcgttacaccaaactgcctctttattctc
tttggtgtgtatggcgacgtgatgagagtgaagattctgttcaataagaaggacaacgct
ctggtccagatggctgatggcacacaggctcagctagcgatgagccacctgaacggggtg
cgtcttcatggccggtctctacgtgtctccatgtctaaacacaccaccgtacagctgccc
agagaaggccatgaggaccaggggttgactaaggactatgccacctctcctctccaccgt
tttaagaagcctggctccaaaaactacaacaacatctaccctccctctggcacactgcac
ctctccaacatacctcctgcagtaggagaggaggatctgaaggctttgttcagcagttca
ggagcttcagtcacagccttcaagttcttccagaaggaccgtaagatggctctgatccag
atgagctcagtggaggaagctgttgagagtctcatcgagttccacaaccatgacctggga
gagaaccaccacctcagagtgtctttctccaaatctaccatctaa
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