Oncorhynchus tshawytscha (Chinook salmon): 112236015
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Entry
112236015 CDS
T05605
Name
(RefSeq) transcription factor SOX-5-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112236015
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
112236015
BRITE hierarchy
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Motif
Pfam:
HMG_box
HMG_WDHD1
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
112236015
NCBI-ProteinID:
XP_042156141
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Position
LG17:13564670..13864088
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AA seq
792 aa
AA seq
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MLTDPELPQEFNRMSSKRPISPYGGTDGEVVMATSRQRLEEEERDDGQAVMHLPLTPYCS
KVSPLSPPPGQPPTLHSAMDQDGSKHWSLSPYPQHNSSTSPGSKQQVEEGGSGAAALGTP
ERRKGSLADVVDTLKQRKMEELIKNEPEEAPSIERLLSKDWKDKLLAMGSGHFGEIKGTS
ESLAEKERQLMGMISQLSSLREQLLAAQDEQKKVAASQMEKQRQQMELAKQQQDQIARQQ
QQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAVAAAQQGFLLPPGFNYKPGC
SDPYPLQLVPTTMAAAAAAATPGLGQLQLQGRRGSEVGIDRTIEQFGVDSNYNNPAWWCL
QQLYAAQLAAMQVSPGAKHSSMSQTNLNTHSPTNTHHEKSRSTPPPKPKDEGAQPLNLSS
KPKTASESKSPTSPASPQVPTMKLGHHGTGSMKHSTAPSSIGGPPSRVSSIDLLSSLSSG
GYLNDHEAVTKAFAEARQMKEQLKREQQVLDAKVAAVNNLSLNNGRSDKDKAALESLSHQ
LKQQSEDREKFNHAMMDFTMSGDSDGSPSVSDSRMFREARGRGNSEPHIKRPMNAFMVWA
KDERRKILQAFPDMHNSNISKILGSRWKSMTNLEKQPYYEEQARLSKQHLEKYPDYKYKP
RPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYFTVGQQAQLPLSSAGVVYPGARSLAGLP
SPQMPSEHSSLSSSPEHAAPPLQTPYHPSLKGDETRVKQEELRLDDSNGDAYDDFDYEDE
EGDYGSDNDNHQ
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgctcacagaccctgagctacctcaggagtttaacaggatgtcttccaagcgaccaatc
tctccatatggggggacagatggagaagtagtcatggcaaccagcagacagagactggaa
gaggaagagagagatgacggacaggctgtcatgcacctccccctgactccctactgcagc
aaggtgtcccccctctccccgccccctggacagccccccaccctgcacagtgccatggac
caggatggcagtaagcattggtctctgagcccctacccccagcacaactcctctacctct
ccaggcagtaagcagcaggtggaggaggggggttcaggggccgcagcgctggggacccca
gagagacgtaagggcagcctggctgacgtggtggacacactgaaacagaggaagatggag
gagctcatcaaaaacgaaccagaagaagcccccagcattgagaggctgttgtctaaggac
tggaaggacaagctgttggccatgggatcaggacattttggagaaatcaaaggtacctca
gaaagcctagcagagaaggagcgccagctgatgggcatgatcagccagctcagcagcctg
agggagcagctcctggcggcccaggatgagcagaagaaagtggccgcctcgcagatggag
aagcagcggcagcagatggagctggccaagcaacaacaggaccagattgctcggcaacag
cagcagcttctgcagcagcaacacaaaatcaacctcctgcagcaacagatccagcaggtc
cagggacagctgcctccgttgatgatccctgtgttccctccagaccagaggactctggct
gtagctgctgcccagcaaggcttcctgctgccccccggattcaactacaaaccaggctgc
agtgacccttaccctctccagctggtacctactaccatggcagcagctgctgccgcggca
acgccaggcctcggtcaactacagctccagggacggagagggtctgaagtggggatcgac
aggactattgaacagtttggagtagactccaactacaacaacccagcctggtggtgctta
cagcagctgtatgcagctcagctggcagcgatgcaggtgtctccaggggccaaacacagc
agtatgtcccagaccaacctgaacacccactctcccaccaacacacaccatgagaagagc
cgcagcaccccgccgcccaaacccaaggacgagggtgctcagcccctgaacctgtcgtcc
aagcctaagacagcaagcgagagcaagtcacccacctcccccgcttccccacaggtcccc
accatgaagctgggtcaccatggcaccgggtccatgaaacacagcacagccccctccagc
atcggaggaccaccgtccagagtcagctccatagacttgctgtcatccctgtcctcgggg
ggctatctgaacgaccacgaggctgtaaccaaggccttcgctgaggccagacagatgaag
gagcagctgaagagagaacagcaggtgttggatgccaaggtggctgccgtcaacaacctc
agcctgaacaacggacgctccgacaaggacaaggcagctctggagagtctgagccaccag
ctgaagcagcagtcagaggacagagagaagttcaaccacgctatgatggacttcaccatg
agtggagactcagatggcagccccagtgtttctgattccaggatgttccgtgaggcccgg
ggccgaggcaacagcgaaccacacattaaacgacccatgaatgctttcatggtctgggca
aaggatgagaggaggaagattctccaggctttccccgacatgcacaactccaacatcagc
aaaatcctcggttctcgttggaagtccatgactaacctggagaagcagccgtactatgag
gagcaggccaggctaagcaagcagcacctggagaagtaccctgactacaagtacaaaccc
cggcccaaacggacctgtctggtggacgggaagaagctgaggattggcgagtacaaggcc
attatgaggaaccgccggcaggagatgagacagtacttcactgtgggacaacaggcccag
ctgcccttgtcctcggcgggcgtggtgtacccaggtgcccgttccttggcaggcttgccc
tccccccagatgccctcggagcactcctcactgtccagcagccccgagcacgccgcccca
cccctccagaccccctaccaccccagcctcaagggagacgagacccgagtcaaacaggag
gagctacgattggacgacagcaatggtgatgcgtacgacgactttgattatgaggacgag
gagggagattatggaagcgataacgacaaccaccaataa
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