Oncorhynchus tshawytscha (Chinook salmon): 112236046
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Entry
112236046 CDS
T05605
Name
(RefSeq) collagen alpha-1(VIII) chain-like
KO
K23455
collagen type VIII alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
TrAA12
Motif
Other DBs
NCBI-GeneID:
112236046
NCBI-ProteinID:
XP_042179683
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Position
LG07:complement(193975..250359)
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AA seq
782 aa
AA seq
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MAKPLPSTHLLVVALQLCLVLRHHARTAAYYGHKQPQHPQQHLPQQHQPMQQIPHMPLGN
GYGNGNGNGNGNGNGNGNGDGLPKQQYGKEMPQHMPYGKEMPYVLPQYGQELPQMLPQMH
EQPQMPPNKGKGKGQSYPSNGKGLGGPPPDDRGLQGPGPEGPPGAQGPPGPQGPPGMLGQ
GMPGPHGKPGPPGPQGYPGIGKPGMPGMPGKPGGGGQPGPKGDLGPGGDVGPMGMPGGPG
LPGPPGLPGIGKPGGQGLPGQPGPRGEPGHKGIPGLPGLPGPKGDKGIGLPGLPGLKGPG
GPPGPPGQGGLPGVGKPGLNGLPGLPGGAGKPGPPGEGGLAGPPGEGGEPGPPGLPGIGK
PGQDGLPGQPGFPGGKGESGPPGLPGGPGLPGYGKPGYPGPKGDKGHGGFPGAPGPKGDK
GHGGLPGQEGLPGPNGPPGLPGSIGPPGGLGFPGPKGEGGNGGPKGLPGPKGEPGPPGLP
GQGGYPGEGGQPGPRGIPGPLGPKGDNGHKGLPGLPGAPGMPGSRGEGGMPGEKGHQGPK
GIPGNFGPGGPLGPPGLPGPKGELGPPGKPGYPGEGKPGVPGALGPQGKPGNGGPPGQPG
QPGQPGPPGPPGPPTQPPGLGEILPELGPGLDGLKQGGYKKPNNGGDRNGLEMPAFTAQL
TNPFPPVGSPVVFDKLLYNGHQDYNPQTGIFSCTIPGIYYFAYHVHCKGANVWVALVKNN
EPVMYTYDEYKKGSLDQASGSAVLPLQQGDTVHVQLPSDQAAGLYAGQYVHSSFSGYLLY
PM
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctcccctctactcatctattggtggtggcactccagctgtgtctagta
ctacgccaccatgcccgtacggcggcatattacgggcacaagcagccgcagcacccacag
cagcaccttccccagcagcaccagcccatgcaacagatacctcacatgcccctagggaac
gggtatgggaacgggaacgggaacgggaatgggaatgggaacgggaacgggaatggggac
gggctgcccaagcaacagtacgggaaggaaatgccacaacatatgccatacggcaaagag
atgccatatgtgctgccacagtatgggcaagaacttccacagatgcttccacagatgcac
gaacaaccccagatgccacccaataagggcaagggaaaaggtcagtcatatcccagtaat
gggaaaggccttggaggcccaccacctgatgataggggactacagggtcctggtcccgag
gggccaccaggagcccaagggcctccaggaccacagggccctccagggatgctaggtcaa
gggatgcccggcccccatggaaaaccaggccctcctggtccccaagggtatcctgggata
gggaaacccggaatgccgggaatgcccggtaaacctggtggaggcggccagccaggtccg
aagggcgaccttggtcctggtggtgatgtaggaccaatggggatgcctggggggccaggt
cttccagggccaccaggcctgccaggcatcgggaagccagggggtcagggactgcctggg
cagcctgggcctcgaggggagcctggacacaagggcatacctggactgcctggtcttcct
gggcccaagggagacaaagggattggcttgccaggattgccaggtttgaaaggacctggt
ggaccacctgggcctcctggtcaagggggtttgccaggggttggaaaaccaggtctgaat
ggactaccaggattgcccgggggggcaggaaaaccaggcccacctggagaaggaggactt
gctggtccaccaggtgaaggaggagaaccaggaccaccagggctaccaggtattggcaag
cccgggcaagatggtttgccaggacaaccagggttcccaggtggtaaaggggaatcaggc
ccaccaggtttgccagggggcccaggcctacctggttacggaaagccaggatatcctgga
ccaaaaggagacaaaggacatggaggttttcctggagctccaggcccaaaaggtgacaaa
ggtcatggaggtctcccagggcaggaaggccttcctggacccaacgggccaccgggcctg
cccggttccattgggccacctgggggtcttggtttcccaggtccgaagggagaaggtggc
aatggagggccaaaggggctgccaggtcctaaaggtgagccagggcctccagggcttcct
ggacagggtgggtatcctggagagggtggtcaaccaggaccgagaggtataccagggcca
ctgggtccgaaaggggataacggccacaaagggttacctggcctccctggagctcctgga
atgcccggttcaaggggagaaggtggaatgcccggagaaaaaggtcaccagggacccaag
ggaatccctggaaattttggtccaggtgggccacttggtcctcccggtcttcccgggcca
aaaggcgagcttggtcctccagggaaacctggctaccccggcgaaggtaaacctggtgtt
ccaggcgctttagggccccaagggaaacctggcaacggtggaccccctggtcaacctgga
caaccaggacaacctggtccccctggcccacccggaccccccacccaaccacctggtctt
ggtgaaatcctccctgagctgggtcctggtctggacggtcttaaacaaggcggttacaag
aaaccaaataatggaggggacaggaacggcctggagatgccagcattcacggctcagctc
accaatcctttcccccccgtaggctcccctgtggtcttcgacaagctcctgtacaatggc
catcaggactacaatccccaaaccggcatcttcagctgtacgataccgggaatctattac
tttgcttaccacgtccactgcaaaggagctaatgtgtgggtggcgctggtcaagaacaat
gagcctgtgatgtacacatatgatgagtacaaaaagggcagcctggaccaggcgtcaggg
agcgctgtgctccccttacagcaaggagacactgtgcatgtacagcttccatctgaccag
gcagcaggactttatgccggtcaatatgtccactcttcattctccggatatttattgtac
ccaatgtaa
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