Oncorhynchus tshawytscha (Chinook salmon): 112236103
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Entry
112236103 CDS
T05605
Name
(RefSeq) cohesin subunit SA-1-like
KO
K06671
cohesin complex subunit SA-1/2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
112236103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112236103
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
112236103
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HEAT_SCC3-SA
STAG
SCD
Cnd1
Cnd3
Motif
Other DBs
NCBI-GeneID:
112236103
NCBI-ProteinID:
XP_042152803
LinkDB
All DBs
Position
LG14:4194701..4253671
Genome browser
AA seq
1295 aa
AA seq
DB search
MITSELPVLQDSSNESGAADTVSLSVSVSELEDPTDTKGKKKRGRPGRPPAANKKPRKSP
AEKATGGAKGRKANGVPQTNGEGGDPVTLFEVVRMGKSAMQSVVDDWIESYKQDRDIALL
DLINFFIQCSGCKGTVRIEMFRNMQNAEIIRKMTEEFDEDSGDYPLTMPGPLWKKFRYNF
CEFICVLIRQCQYSIIYDEYLMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVAL
NLSIHQDNTQRQYEAERNKMAGKRANEKLELLLQKRKELQENQDEIENMMNSIFKGIFVH
RYRDAIAEIRAICIEEIGVWMKMYSDAFLNDSYLKYVGWTLHDRQGEVRLKCLKALQNLY
TNRELFPKLELFTNRFKDRIVSMTLDKEYDVAVEAIRLITLILQGSEDALSNEDCENVYH
LVYSAHRPVAVAAGEFLHRKLFSRHDPQAEEELAKRRGRSSPNGNLLRMLVLFFLESELH
EHAAYLVDSLWESSQELLKDWECMTELLLEEPVQGEEVLSDRQESSLIEVMVCTIRQAAE
AHPPVGRGTGKRVLTAKERKTQIDDKNKLTEHFIMALPMLLSKYQADSEKVANLLQIPMF
FDLDVYSAGRMEKHLDALLKQIRLVVEKHIETDVLEACSKTYSILCSEEYTIMNRVDIAR
SQLIDEITDRFTHSVEDLLQEAEEADDDDIYNVLSTLKRLTAFHNAHDLTRWDLFGSCYR
LLKAGIEQGAMPEQIAVQALQCSHYSILWQLVKITEGTPSKEDLVALRRVVKSFLAVCQQ
CLSNVNTPVKEQAFMLLCDLLMVFSHQLVSGGREGLEALVFNPDSTLQNELLTFILDHVF
IDQDDENQSMEGDEEDEANKIEALHKRRNLLAAFSKLIIYDIVDMPAAADIFKHYMKYYN
DYGDIIKETLSKTRQSDKILCAKTLILSLQQLFNELLQDQGPTLDRTSSHVSGIKELARR
FALTFGLDQIKTREAVATLHKDGIEFAFKEPSPQGEGNPPLHLAFLDILSEFSSKLMRQD
KRTVHMYLERFMTFQMALQRDDCWLPLISYRNSLQAGGDDDTMSVVSGYSSRGSSVRSKK
TKAATPTATVAAAKRKLPEAEESSSSSADMSWQHQSMQTPVMMPSPHLTSTMMRGPGDMR
EEAKRGRDDSYMGVYALPSDSQQHPHPHTLPQTPQLHQTPIDYNTQVTWMLAQRQQEEVR
QQQERAMNYAKLRTNLQQAIRRGTGLMEEDEEPIVEDVMMSSEGRMEDLNEGMDFDTMDI
DLPPSKNRRERSELKPDYFDPGSIMDESVLGVSMF
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atgatcacctctgagctgcctgtcctacaggactcgtccaatgagagcggagcggcagac
acagtgagtctgagtgtgagtgtgagtgagctggaggacccgacagacactaaaggcaag
aagaagagagggaggcctggcagaccaccagcagccaataagaagcctcggaagtcccca
gcggagaaggctacaggcggggctaaagggaggaaggccaatggggtccctcagaccaac
ggcgagggaggagaccccgtcactctgtttgaggtggtcagaatgggaaagagtgccatg
cagtctgtggttgatgactggatcgagtcgtacaagcaggacagagacatcgccttactg
gacctcatcaacttctttatccagtgttctggctgcaaaggcaccgtgcgcatcgagatg
ttccggaacatgcagaatgctgagatcatcaggaagatgacagaggagtttgacgaggac
agtggggactaccctctcaccatgcccgggccgctgtggaagaagttccgctacaacttc
tgtgagttcatctgcgtattaatacgtcagtgccaatacagcatcatctacgatgagtac
ctcatggacacagtcatatccctcctcacgggactgtctgactcacaggtcagagctttc
agacacaccagcacactggcagcgatgaagttgatgacagcgttggtgaacgtggcgttg
aacctcagtatccaccaggacaacacccagagacagtatgaggctgagaggaacaagatg
gccggaaaacgggccaatgagaagctagagctgctgctgcagaagaggaaggagctccag
gagaaccaggatgagattgagaacatgatgaactctatcttcaaaggaatctttgtccac
cgctacagggatgctatagctgagatcagagctatctgtattgaggagattggagtttgg
atgaagatgtactctgacgccttcctcaacgacagctacctgaaatatgtaggatggacc
ttacacgaccggcaaggtgaggtccgtctgaagtgtctgaaggctctccagaacctgtac
accaacagagaactgtttcctaaactggagctgttcaccaaccgcttcaaggaccgcatc
gtgtccatgactctggataaggagtatgacgtggctgtggaggctattagactgatcact
ctcatcctgcagggcagcgaggatgcattgtccaatgaggactgcgagaatgtctaccac
ctggtttactccgcccacagacctgtcgccgtggcagcaggagagtttctgcacaggaag
ttgttcagcagacatgacccccaggcagaggaggagttggctaagaggagagggaggagc
agccccaacgggaacctcctccgcatgctggtgctgttcttcttggagagtgagcttcat
gaacatgcagcctatctggtggactctctgtgggagagttctcaggagctgctgaaggac
tgggagtgtatgactgagttactgctggaggagcctgtacaaggagaggaggtgctgtca
gacagacaggagagttccctgatagaggtgatggtgtgtaccatccggcaggcagcagag
gctcacccacccgtcggcaggggcactgggaagcgtgttctcacggcgaaggagaggaag
actcagatcgacgacaagaacaaactgacagaacacttcatcatggccctgcccatgctg
ctgtctaagtaccaggccgactctgagaaggtggctaacctgctacagatccctatgttc
tttgatctggacgtgtacagcgctgggcgtatggagaagcacctagatgccttactgaag
cagatccgcctggtggtggagaaacacattgagacagacgtgctggaggcctgcagtaag
acctacagcatcctgtgttctgaggagtacaccatcatgaacagagtggacatcgcccgc
tcgcaactcatcgacgagataacggaccgcttcacacactctgtagaagacctgctgcaa
gaggccgaggaggccgacgatgacgacatctacaacgttctgtctaccctcaagagactc
acggccttccacaatgctcatgacctgacgcggtgggacctgtttggtagctgctacagg
ttgttgaaggctggtattgagcagggggccatgccagagcagatcgctgtccaggccctg
cagtgttcccactactctatactgtggcagctggtgaaaatcacagagggaactcctagt
aaggaggacctggtggctctgaggagagtggtgaagtccttcctggctgtctgtcagcag
tgtctgtccaatgtcaacacacctgtcaaagaacaggccttcatgttgttgtgtgacctg
ctgatggtcttcagtcaccagttggtgtctgggggcagagaaggactggaggccctggtg
ttcaacccagacagcaccttacagaacgagctgctcaccttcatcctggaccacgtgttt
atagaccaggatgatgagaaccagagcatggaaggtgacgaggaggatgaagccaataag
atagaagcccttcacaagaggagaaacctgctcgcagccttcagcaaactcatcatctat
gacatcgtggacatgcctgctgctgcagacatcttcaaacactacatgaagtattataat
gactatggtgatatcatcaaggagactctcagtaagaccagacagagtgataagatcctc
tgtgccaaaaccctcatcctcagtctgcaacagctgttcaacgagcttctccaggaccag
ggtcctactctggacagaacgtcgtctcacgtcagcggcatcaaggagttggcccggcgc
ttcgccctcaccttcggcctggaccagatcaaaaccagagaggctgtcgctacactgcac
aaggatggtatagagtttgcgtttaaggagcccagtccacagggagagggcaaccctcct
cttcacctggccttcctagacatcctctctgagttttcctccaaactaatgaggcaggac
aagaggactgttcatatgtatctggagaggttcatgaccttccagatggccctccagaga
gacgactgctggctcccgctcatctcctacaggaactccctgcaggccggcggggacgat
gacaccatgtctgttgtctccggctactcctccagagggtcgtcggtcagatccaagaag
accaaggctgctactcccactgctaccgtcgctgcagctaagaggaaactccctgaagct
gaggagagcagtagcagcagtgcagatatgtcgtggcagcaccagagcatgcagacgccc
gtgatgatgccctccccccacctcacctctaccatgatgagaggaccaggggacatgagg
gaggaggccaaacgggggagagacgacagctacatgggagtgtacgccctcccttcagac
tcccagcagcatcctcaccctcacacactcccccaaacccctcaactccaccagacaccc
atcgactacaatacccaggtgacgtggatgctggctcagaggcagcaggaggaggttcgt
cagcagcaggagagagccatgaactacgccaagctcagaaccaacctgcaacaggccatt
cggcgtggtacagggctgatggaggaggatgaggagcctatcgtagaggacgtgatgatg
tcgtcagagggtcgtatggaagacctcaacgagggcatggactttgacaccatggacatc
gacctgcccccctctaagaacaggagagagagatcagagctgaaaccagactactttgac
cctggttctatcatggacgagtctgtccttggagtgtccatgttttaa
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