Oncorhynchus tshawytscha (Chinook salmon): 112236153
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Entry
112236153 CDS
T05605
Name
(RefSeq) low-density lipoprotein receptor-related protein 6
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04150
mTOR signaling pathway
otw04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
112236153
04150 mTOR signaling pathway
112236153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112236153
Membrane trafficking [BR:
otw04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
112236153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
SGL
DUF5050
EGF
cEGF
Gp3-like
Motif
Other DBs
NCBI-GeneID:
112236153
NCBI-ProteinID:
XP_042170781
LinkDB
All DBs
Position
Unknown
AA seq
1620 aa
AA seq
DB search
MGAVLRTVLLCSFSLLIRGVPLLLYANRRDLRLVDAAHGRANATVVVGGLEDAAAVDYVY
AQGLVYWSDVSEEAIKCTTFNQSGPGSAAAAQTVVVSGLASPDGLACDWLGRKLYWTDSE
TNRIEVAELDGSLRRVLFWQDLDQPRAISLDPGRGYMYWTDWGEVPKIERAGMDGTNRAM
IIDKEIYWPNGLTLDYSQEKLYWADAKFNFIHRSNLDGTGREVVVKGDLPHPFALTLYEE
TLFWTDWNTHSIHSCQKETGEDRKKVHSDIFSPMDIHVYSQKRQPLLSSPCSVNNGGCSQ
LCLLSPITPHYQCACPTGVQLLEDSKTCRDGPTQLLLLARRTDLRRISLDTPDFTDIILP
TDDIRHAIAIDYDPVDGHIYWTDDDVRAIRRSYLDGSDAQFIVTSQVNHPDGIAVDWIAR
NLYWTDTGTDRIEVTRLNGTMRKILISEDLDEPRAIVLDPVAGYMYWTDWGEVPKIERAD
LDGTERLVMVNTSLGWPNGLALDYTDRMIYWGDAKTDKIEVMCMDGSGRRILVEDKLPHI
FGFTLLGDYVYWTDWQRRSIERVHKHTTEREFIIDQLPDLMGLKATYVHQTFGTNLCAEA
NGGCSHLCLYKPVGVQCACPIGLELIADLSTCIVPEAFLLFSRHTDIRRISLETNNNNVA
IPLTGVKEASALDFDITDNRIYWTDITLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWL
GKNLYWADTGTNRIEVAKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDR
SAMDGTGRITLVPNVGRANGLTIDYAERRLYWTDLDTTLIESSNMLGLEREVIADDLPHP
FGLTQYQDYIYWTDWSQRSIERANKTSGQNRTVIQGHLDYVMDILVFHSSRQGGWNACAS
TNGQCSHLCLAVPISSFVCGCPAHFSLNNDNKTCSAPTSFLLFSQKSAINRMVMDEHQSP
DIILPIHSLRNVRAIDYDPLDKQLYWIDSKQNAIRRAQENGNMSMTVVWSQVGGPNLGLQ
PFDLSIDIYSRFIYWTSEVTNVINVTRTDGSRVGVVLRGEHDRPRAIVVNPERGYMYFTN
LQERSPKIERAALDGTEREVLFFSGLGKPVALAIDNEVGKLFWVDSDLRRIESSDLSGAN
RIVIEDSNILQPVGLTVFGNHLYWIDRQQQMIERIDKTTREGRTKIQARIASLSDIHAVY
DLDMSEYSKHPCTWDNGGCSHICIVKGDGTTRCSCPVHLVLLQNELSCGEPPTCSPEQFS
CVSGEVDCIPHAWRCDGYPECDDSSDEGDCPVCSDSEFQCDSRQCVDLSLRCNGEVNCQD
RSDENKCEVRCSPDHFSCSSGQCVGKHQKCDHSTDCSDNSDEMGCYPTEEPSSQPTNTIG
SIVGVVMALFVVGAIYLVCQRVLCPQMKDDRETVTNDLVVHGPSVSLGYVPHPASLSGSL
PGMSRGKSVIGSLSIMGGSSGPPYDRAHVTGASSSSSSSTKGTYFPPILNPPPSPATVRS
QYTMEFGYSSNSPSTHRSYSYRPYTYSHFAPPTTPCSTDVCDSDYTPGRRAPPTSNSGIA
KGYTSDLNYDSEPFPPPPTPRSQYLSAEENCESCPPSPYTERSYSHHLYPPPPSPCTDSS
NT seq
4863 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccgtgctacggactgtgttgttgtgtagtttttctttactaataagaggtgta
cccctcctgctctatgccaacagacgggacctgcggctggtggatgcggcccacggcagg
gccaacgccacggtggtggtgggcggtctggaggacgccgccgctgtggactacgtatac
gctcagggtttggtctactggagtgacgtcagcgaggaggcaatcaaatgcaccaccttc
aaccaatcagggcccggctcggcggcggccgcccagacggtggttgtatcggggctggcg
tccccggacggcctggcctgtgactggttaggcaggaagctgtactggacagactccgag
accaatcggatagaggtggccgagctggatggatcattacggagagttctcttctggcag
gacctggaccagccccgagccatctctctggacccggggagggggtacatgtactggacg
gactggggcgaggttcctaagattgagcgagcggggatggacggtacaaacagagccatg
atcattgacaaggagatctactggcccaacggtctcacgctggactacagccaggagaaa
ctgtactgggctgacgccaagttcaacttcatacatcgctccaatctggacggcactggg
agggaggtggtggttaagggagacctccctcaccccttcgctctgacgctgtacgaggag
actctcttctggaccgactggaacacccattccatccactcgtgtcagaaagagaccggg
gaggatcggaagaaagtccactcggacatcttctctcccatggatatacacgtctacagc
cagaagagacagccgctactgtcttcaccatgttccgtgaacaacggaggctgttcccag
ctctgtctcctgtctcctattacacctcactaccagtgtgcctgtcccaccggagtccag
ctgctagaggacagcaagacctgcagagacggtcccacacagctcctcctcctggcccgg
cggactgacctgcgccgtatctccctggatactcccgacttcaccgacatcatcctcccg
acggacgacatccgccacgccatcgccatcgactatgacccggtggacggacacatctat
tggacggacgacgacgtccgggcaatcaggaggtcctacctggacggctctgacgctcag
ttcatcgtcacctcacaggtgaaccatcctgacggcatcgctgtggactggatcgcccgg
aacctgtactggacggacacgggaacggaccgcatcgaggtgacacgcctcaacggaacc
atgaggaagatcctgatatcagaggacctggacgagccacgagccatcgtactggatcct
gtcgctggatacatgtactggacagactggggcgaggttcctaagattgagcgtgccgac
ctggacgggacggagaggctagtgatggtcaacacttccctgggctggcccaatggtctg
gcgctggactacacagaccggatgatctactggggcgacgccaagacggacaagatagag
gtgatgtgtatggatggttcaggcaggaggatcctggtagaagataagctacctcacatc
tttggcttcactctgctgggggactatgtgtactggacagactggcagagacgcagcatc
gagagggttcacaaacacaccacggagagagagttcatcatagaccagctaccagacctg
atggggctcaaagctacatatgtacaccagaccttcggtaccaacctgtgcgcagaggct
aatggtgggtgtagccacctatgcctgtataagccggtgggcgtccagtgtgcctgtccc
attggtctagagctgatagctgacctgtccacctgcatcgtaccagaagccttcctcctc
ttctcccgacacacagacatcagacgcatctccttggaaacaaacaacaacaacgtggcc
atcccgctgaccggggttaaagaggcgtctgcacttgactttgacatcaccgacaaccgt
atctactggacagatatcacattgaagacaatcagtcgtgcgtttatgaacggcagcgct
ctggaacacgtggtggagtttggcctggactacccagaaggcatggcggtggactggttg
gggaagaatctgtactgggccgacacggggaccaatcgtatcgaggtggccaagctggat
ggacagcacagacaggtcctagtctggaaggatctggacagccctcgagccctggcactg
gaccctgctgaggggtttatgtactggacagagtggggtgggaagcccaagattgaccgc
tcagcgatggacgggacgggtcggatcactctggtgcccaatgtgggccgagccaacggg
ctgaccatcgactatgccgagaggcgactgtactggactgacctggacacgacactcata
gagtcctccaacatgctgggtctggagcgtgaggttatagccgacgacctcccccacccc
tttggtctgacccagtaccaggactacatctattggacggactggtctcagcgcagcatc
gaacgggccaataagacatcgggccagaaccgtacggtcatccagggtcacctagactac
gtgatggacatcttggtcttccactcgtcacgccaggggggctggaacgcctgcgcctcc
accaatgggcaatgctcacacctctgtctggctgtaccaatcagcagctttgtctgtgga
tgccccgcccacttctccctcaacaatgacaacaagacctgcagtgcccctacgtcgttc
ctcttgttcagtcagaagtcagccattaaccggatggtgatggatgagcatcagtctcct
gacatcatccttcccatccacagtctgaggaatgtcagggctatagactacgaccccctg
gataaacaactgtactggatcgactccaaacagaacgcgatccgcagagcgcaggagaac
gggaacatgagtatgacggtggtgtggagccaagtgggcggtcctaacctgggcctccag
ccgtttgacctgagcatcgacatctacagccgcttcatctactggaccagcgaggtcact
aatgtcattaacgtgacgaggacagacggcagccgggtgggagtggtgctgagaggagaa
cacgacagacccagagccatcgtggtcaacccagagcgagggtacatgtactttaccaac
ctgcaggagcgcagtcctaagatagaacgagcagcgctcgacgggacagagagagaggtg
ttgttcttcagtggcctggggaagcccgttgccctggccatagacaatgaggtcggcaag
ctgttctgggtcgactcagacctccgacgcatcgagagcagtgacctatcaggagccaat
cggattgtgattgaggactccaacatcctccagccggttggtctgacggtgtttggtaac
cacctgtactggatcgaccgtcagcagcagatgatcgaacgcattgacaagacgaccagg
gagggaaggaccaagatccaggctcgcattgcctctctcagcgacattcacgctgtctac
gacctcgacatgagcgagtacagtaagcacccttgtacctgggacaacggaggctgttct
cacatctgtatcgtcaagggagacggaaccacacgctgctcctgtcctgttcatctggtc
ctgctgcagaatgaactctcctgtggagaaccccccacctgttctccagaacagttctcc
tgtgtatccggggaggtggactgtattccccacgcgtggcggtgtgacggctacccagag
tgtgatgacagcagcgacgagggagactgtcctgtctgttcagattcagagtttcagtgt
gactccagacagtgtgttgacctcagcctccgctgcaacggagaggtcaactgtcaggat
cgctcagacgagaacaaatgtgaagtgcgctgctctccggaccacttcagctgttctagt
ggtcagtgtgtggggaaacatcagaagtgtgaccactctacagactgctctgacaactcg
gacgagatgggctgctacccgactgaagagccgtcctcccagcccaccaacaccatcggc
tccattgtgggggttgtcatggcgctgtttgtggtgggcgccatctacttggtgtgccag
cgcgtgctctgtccccagatgaaggatgacagggagactgtaaccaatgacctggtggtc
cacggcccttctgtttctctgggttatgtacctcaccctgcctctctgtccgggtctctg
ccaggtatgtccagggggaagtctgtgattggttcgttgagcatcatgggcgggtccagt
ggccccccttacgaccgcgcccacgtaactggagcctcctcctcaagctcctcctccacc
aagggcacttacttccccccgatcctgaaccctcctccatctcctgcgaccgtcaggtct
cagtacaccatggagtttggctactcctccaacagcccgtcaacgcaccgttcatacagt
taccgtccctacacctacagtcacttcgcccctcccacaaccccctgctccacggacgtc
tgcgacagcgactacacccccggacgccgcgccccgcccacctccaactccggcatcgcc
aaaggttacaccagcgacctgaactacgactccgaacccttccccccaccccccaccccc
cgcagccagtacctgtcagcggaggagaactgtgagagctgccccccctccccctatacg
gagcgctcttactctcaccacctctaccccccgcccccatcaccctgcacagactcctcc
tga
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integrated database retrieval system
