Oncorhynchus tshawytscha (Chinook salmon): 112236275
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Entry
112236275 CDS
T05605
Name
(RefSeq) cysteine protease ATG4B-like
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04136
Autophagy - other
otw04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112236275
04136 Autophagy - other
112236275
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
otw01002
]
112236275
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112236275
03029 Mitochondrial biogenesis [BR:
otw03029
]
112236275
Peptidases and inhibitors [BR:
otw01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
112236275
Membrane trafficking [BR:
otw04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
112236275
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
112236275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
112236275
NCBI-ProteinID:
XP_042179614
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All DBs
Position
LG06:complement(5113786..5136434)
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AA seq
449 aa
AA seq
DB search
MDAATLTYDTLGFGEFEDFPETSEPVWILGKEFNALTEKEDILSDVTSRLWFTYRKNFPP
IGGTGPTSDTGWGCMLRCGQMILGEALVCRHLGRDWRWVRGQPQRGQYISILNAFLDKKD
SYYSLHQIAQMTSKLTCVEYCPSCPQETVLNIVRLALRKLTVLNIVRLALRKLTVFDSWS
RLAVHVAMDNTVVMEEIKRLCMPWLDYGGAACAEPPGWMPKHNGCLEGACALAEEETALW
KPLVLLIPLRLGLSDINKAYIETLKQCFQLPQSLGVIGGKPNSAHYFIGYVGEELIYLDP
HTTQPAVEPCEDSQVPDDTYHCQHPPCRMHICEIDPSVAVGFFCRTEDDFDDWCMRIRKL
SHTRGSLPMFELVDCQPSHFACSVDVLNLTPDEAGIQSAVRCGQAHCTTDKAPFKGNFPD
VRGDRVHDFSDRSERFFDSEDEEFEILSL
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagctactctcacgtacgacacacttggctttggagagtttgaagattttcca
gagacctcagagccagtgtggatcttggggaaagaattcaacgcactcacagaaaaggaa
gacattctttcagatgtcacttcacgactgtggttcacctacagaaaaaacttcccgccc
attggagggacagggcctacgtccgacacaggctggggctgcatgctgcgatgtggacag
atgatcctaggcgaggccctggtctgcaggcatctaggccgagactggagatgggtgaga
ggccagcctcagagaggacagtacatcagtatcctcaacgccttccttgacaagaaagac
agctactattctttacatcaaattgcccagatgacatcaaaactaacctgtgttgaatat
tgtccgtcttgccctcaggaaactgtgttgaatattgtccgtcttgccctcaggaaacta
actgtgttgaatattgtccgtcttgccctcaggaaactaactgtgtttgactcgtggagt
cgtctggcggtacatgttgctatggacaacaccgtggtgatggaggagatcaagcggttg
tgtatgccctggctggactatggtggagcagcgtgtgcagagcccccggggtggatgccg
aagcataacggctgcctggagggggcctgtgccctggctgaggaggagacggctctctgg
aagcccctggtccttctcatccctctcaggctgggcctgagtgacatcaacaaggcctac
attgagaccctgaagcaatgctttcagctgccccagtccctgggtgtcatcggagggaag
cccaacagtgcccattacttcataggctatgttggagaggagttgatctacctggacccc
cacaccacccagcctgcggtagagccctgtgaggacagccaggtccccgacgacacttac
cactgtcagcatccgccgtgccgcatgcacatctgtgaaatagacccctccgtcgcagtg
ggtttcttctgcagaacggaggacgactttgatgactggtgtatgcgtatccgaaagttg
tcccacactagaggaagcctgcccatgtttgagctggtagactgtcaaccatctcacttc
gcctgctctgtagacgtgctcaacctcactccggatgaggctgggattcagtcagcggtg
cgttgtggacaagcgcattgcactaccgacaaagcgccttttaaaggcaatttccctgac
gttcgcggagatcgcgttcacgatttctcagaccggtcggagcggttctttgattctgag
gatgaagagtttgagatcctgtccctgtga
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