Oncorhynchus tshawytscha (Chinook salmon): 112236396
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Entry
112236396 CDS
T05605
Name
(RefSeq) thrombospondin-type laminin G domain and EAR repeat-containing protein-like
KO
K24437
thrombospondin-type laminin G domain and EAR repeat-containing protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
otw03037
]
112236396
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112236396
Cilium and associated proteins [BR:
otw03037
]
Other cilia and associated proteins
Stereociliary proteins
112236396
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
112236396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EPTP
FERM_M
Laminin_G_2
IRS
Laminin_G_1
Laminin_G_3
TS_C
Motif
Other DBs
NCBI-GeneID:
112236396
NCBI-ProteinID:
XP_042162324
LinkDB
All DBs
Position
LG26:complement(52675375..52736126)
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AA seq
682 aa
AA seq
DB search
MSVLLLLVCMSLLCSGTTGGWRPCTDLLPLDFLSRVLPPGGEPPLPEVHMVQSRGARGLQ
LTGSQEALSFPASQLFTNCDHFPSEFSFVVTLKIPRLANKRNEYIFSLVEEESDRLLIGL
LVSQERLHFLFQGPTVKKRITFRAVRLADNHWHTVVLAVTGRYATLRVDCGMALELVYEK
PFPSDLCTAHSRFYIGSRRRWKGLFSGLLRQLVLLPGSDATSRVCPSSDPRLAVLSVPQA
LLTMPITPTGNDIVPLYPYEAEVFITPGTQPPCAKAEEGQLWFNTLKKGLFLCDGRLWMP
LLQEKERLDYVEDYQDLYTNSETFDIEVFHIPSQGLFAATANRETNPGSGIYKWVDGKFQ
VYQNIITYEARAWKYFTVGNKMFLAVANSKGQPGRGVGGVSDLQVEQQEVNVSTLSDHRD
TQCSGLGGLQHTGTTFPGCGQSQTRRHPAAPGRSQAPVPPRDEARGSWSLDTVYPVGRLT
RRILHFTKVGAAGPVGQTLERRRTSFLDGTLRRTGLKTGSMKKQKMEEEQMLEMWVKEET
SATRTSIVEKWSRLQGLDQHTAMLKYMNIIKEWPGYGSTLFDVECKEGGFPHDLWLSVSA
ENVSVYKRGEPKPLETFPYEHIIFFGSPQATTYKITVDDRDMFFETPLVGEITKIMKAYI
NMIVKKRCSVRSGPSYGTNWIR
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtactgctgctgctggtctgtatgtctctcctctgctctgggacgactggggga
tggagaccatgcacagatctgttacctttggacttcctgtcgcgggtcttaccacctggc
ggggagccccccctgcctgaagtgcacatggtccagtccaggggggcccggggcctgcag
ctaaccggctctcaggaggccctcagcttccccgcttcgcagctcttcaccaactgtgac
cacttcccttctgagttctccttcgtggtcacgctcaagatcccacgccttgccaacaag
aggaacgagtacatcttctcgttggtggaggaggagtcagaccggctgctgattggtcta
cttgtctctcaggagaggctccactttttgttccagggcccgacagtcaagaaacggatc
acgtttagggcggtgcggctggcggacaaccactggcacacagtggtgttggccgtcacc
gggcgctatgctacactcagagtggactgcggtatggccctggagctggtctatgagaag
cctttccccagtgatctctgcactgcccactccaggttctacatcggcagcaggaggcga
tggaaaggactgttctctggtctgctgcgacagctggttctgttgcctgggtcagatgct
acctcccgagtttgtccctcttcagaccccagactggcagtcctctctgtccctcaggcc
ctgctcaccatgcccatcacacccactgggaacgacatagtccccctgtatccttacgag
gcagaagtgttcataaccccggggacccagcctccctgtgccaaggcagaggagggccag
ctgtggtttaacacactgaagaaaggcttgttcctgtgtgatggacggctgtggatgcct
ctgctgcaagagaaagagcgtctggactatgttgaagactaccaagacctttacaccaac
tcagagacgttcgacatcgaggtgttccacatcccctcccaaggactgttcgctgccaca
gccaatcgcgagaccaacccgggctctggaatctacaagtgggtggatgggaagtttcaa
gtgtatcagaacatcatcacctatgaagcacgggcatggaagtacttcactgtgggcaac
aagatgttcctagcagtggctaactccaagggccagcccgggcggggagtgggaggagtc
agtgatctacaagtggagcagcaggaagttaatgtttctaccttatcagaccatagagac
acacagtgctctggactgggaggccttcagcatacaggaacaacatttcctggctgtggc
caatcacagacgagaagacaccctgcagcacctggccgctctcaggctccagttcctcca
cgggacgaggcccggggcagctggtctctggacaccgtctaccctgtagggaggctcaca
agacgcatcctgcacttcaccaaggtgggcgcggcggggcctgtgggccaaacccttgag
cggaggcggaccagcttcctggacgggacactgcgccgcaccgggctgaagacgggctcc
atgaagaaacagaagatggaggaggaacagatgctggagatgtgggtgaaggaggagact
tcagccaccaggacctccatcgtagagaagtggtccagacttcagggactggaccagcac
actgccatgctcaaatacatgaacatcatcaaggagtggcccggatatgggtccacactg
ttcgacgtagagtgtaaagaaggaggctttcctcatgacctgtggctgagtgtgagtgca
gagaacgtgtcggtctacaagagaggagaacccaaacctctggagacgttcccctacgaa
cacatcatcttcttcggatctccccaggccactacctataagatcacagtggacgacaga
gatatgttctttgagacacctctggttggagagatcactaagatcatgaaagcctacatc
aacatgatagtaaagaagagatgcagtgtcagatctgggcccagctacggaaccaactgg
atcaggtga
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