Oncorhynchus tshawytscha (Chinook salmon): 112236423
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Entry
112236423 CDS
T05605
Name
(RefSeq) thrombospondin-2 isoform X1
KO
K04659
thrombospondin 2/3/4/5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04145
Phagosome
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112236423
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112236423
09144 Cellular community - eukaryotes
04510 Focal adhesion
112236423
09142 Cell motility
04820 Cytoskeleton in muscle cells
112236423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112236423
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112236423
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112236423
Membrane trafficking [BR:
otw04131
]
Endocytosis
Phagocytosis
Opsonins
112236423
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112236423
Exosomal proteins of colorectal cancer cells
112236423
Exosomal proteins of bladder cancer cells
112236423
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112236423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
EGF_3
TSP1_ADAMTS
TSP1_CCN
Laminin_G_3
cEGF
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
112236423
NCBI-ProteinID:
XP_042183432
LinkDB
All DBs
Position
LG01:95552340..95607423
Genome browser
AA seq
1190 aa
AA seq
DB search
MILRSLNLLPILLLCSSALPQDGEVTSDDDTTFDLFDISGITRKTLGAKQFRGQDTDNPA
YRFIRFDHLPSVSAPILKQMLQQIQNNEGFVFVASMRQDRGSRGTLIAMEGADGQRQFEI
VSNGRANTLDLVYWVDGSQNVVSFEDVDLSDSQWKNITLHVHGENANLFVGCSLIDSFIL
DEPFYEYLQAEGSRMFVAKGSIRENHFRGLLQNVRFMFDTSVDDVLRNKGCEVTKPDEAN
TVVSESTDMEDVSSSTAITTNFIGQKTENLGADMCERSCEELSIMFQELKGLRVVVGNLI
DGLQKVTEENTVMKDTLGKIKNSKEKHMCWQDGRMFEDKEDWVVDSCTTCTCQDSKIVCH
QITCPPVACVGPSFIDGECCPVCLPKDSEDGWSPWSEWTECTVTCGTGTQQRGRSCDATS
NPCSGPSIQTRKCSLGKCDSRVRQDGRWSLWSPWSSCSVTCGEGQITRIRHCNAPTPQLG
GKDCEGQGRETQRCEAKPCPIDGGWGPWSPWAICSATCGGGVKGRTRVCNSPEPQYKGKK
CLGETNDSNACNKKDCPIDGCLSNPCFGGVHCNSGSDGSWECGPCPLGFRGNGTHCEDVN
ECDIVSDVCFKAGGASRCVNTDPGFHCLACPPRYKGTQPFGVGVEAASKNKQVCEPENPC
KDKTHNCHRSAECIYLSHFSDPMYKCDCRIGYAGDGFICGEDSDLDGWPNQNLVCDANAT
YHCRKDNCPNLPNSGQEDFDKDGQGDACDKDDDNDAIVDERDNCPLLYNPRQFDFDKDDV
GDRCDNCPYEHNPAQIDTDHNGEGDACAVDIDGDEIPNEQDNCPYVYNNDQKDTDMDRVG
DQCDNCPLLHNPDQADTDNDLVGDQCDNNQDIDEDGHQNNLDNCPYVANSNQADHDKDGK
GDACDFDDDNDGIPDDRDNCRLTPNKDQLDSDGDGRGDACKDDFDNDNIPDILDVCPENN
AVTVTNFRKFQMVHLDPKGTTQIDPNWVVRHQGKELVQTVNSDPGIAVGFDEFNAVDFSG
TFYVNTDRDDDYAGFVFGYQSSGRFYVVMWKQVTQTYWEDKPSKAFGISGVSLKVVNSTT
GTGENLRNALWHTGNTKDQVRTLWHDPKNIGWKDYTAYRWHLIHRPKTGFIRVVVYEGKQ
ILADSGPVYDKTFAGGRLGLFVFSQELVFFSDLKYECRDELEFPTVLSIR
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgatactcagaagtctcaacttgctgccgattttattactttgctcctcagcgctacct
caagatggcgaggtcacatcggatgacgacacaacgtttgacctgtttgatattagcggt
atcacacgcaagactctgggcgccaagcaattccgcggccaagacacggacaaccctgct
taccgcttcatccgcttcgatcatttgccctcagtgagcgcgcccatactcaaacagatg
cttcagcaaatccagaacaatgagggcttcgtgttcgtggccagcatgcgccaggaccgc
ggatcgcggggaaccctcatcgccatggaaggcgccgacggccagcggcagtttgaaata
gtctccaacggccgcgccaacacgctggaccttgtctactgggtggacggctcccaaaat
gttgtctccttcgaggatgttgacctgtccgactcgcagtggaagaatatcacacttcat
gttcatggtgaaaacgcaaatctgtttgtgggctgcagtctcatcgacagcttcatcttg
gatgagccgttctacgagtacctgcaggcagaggggagccgaatgttcgtcgctaaggga
tccatccgtgaaaaccacttcagggggttactgcagaacgttcgcttcatgttcgacaca
tccgtggatgacgttcttaggaacaagggctgtgaagtcactaagccagacgaggccaac
actgtggtgagtgagagcacagacatggaggatgtgagttcctccaccgccatcaccact
aacttcattggccagaaaacagagaatctaggagcagatatgtgtgaacgatcctgtgag
gaactcagcatcatgtttcaggagctcaaaggactgcgggttgtagtggggaacctcatt
gacggcctacagaaagtgaccgaggagaacacagtgatgaaggacactctgggaaagata
aagaactccaaggagaaacacatgtgctggcaggatggacggatgtttgaagataaggag
gactgggtggtggacagctgcaccacgtgtacctgccaggactcaaagattgtgtgtcac
caaatcacctgtcctcctgtggcctgtgttggcccctccttcatcgacggagagtgttgc
cctgtgtgtctgcccaaggacagtgaggacggctggtccccctggtcagagtggacagag
tgtactgtcacctgtgggacaggtactcaacagagaggacgctcatgtgatgccaccagt
aacccctgctctggaccatccatccagaccaggaaatgcagcctgggaaaatgtgacagc
cgagttcgtcaggatggtaggtggagcctgtggtctccatggtcatcatgttcagtgacg
tgtggcgagggtcaaatcaccaggatacgccactgcaacgcccccacaccacaactgggg
ggcaaagactgtgagggccaggggagagagacacagcgctgtgaggccaagccctgtccc
attgacggtggttggggaccatggtcgccatgggcgatctgctcggcaacctgtgggggt
ggagttaagggtcggacccgtgtctgtaacagccccgaaccccagtacaaaggcaagaag
tgcctcggggagaccaatgacagtaacgcctgcaacaaaaaggactgccctatcgacggc
tgtctgtctaacccatgctttgggggagtgcactgtaacagcggctctgacggatcctgg
gagtgtggaccctgcccccttggtttccgcggcaacggcacccactgtgaagatgtcaac
gagtgtgacattgtgtcagatgtctgctttaaagctggtggagcatcgcgttgcgtcaac
acagacccagggttccactgtctggcctgcccaccccgctacaagggaacacagcccttc
ggtgtgggggtggaggctgccagcaagaacaaacaggtttgcgagccagagaacccctgc
aaagacaagacccacaactgtcatcgttcagctgagtgtatctaccttagccacttcagt
gaccccatgtataagtgtgattgtaggataggctatgccggggatggcttcatctgtgga
gaggactctgacctagacggatggcccaatcagaacctggtgtgtgacgccaatgccacc
tatcactgcaggaaggataactgccccaacctgcctaactctggacaagaggactttgac
aaagacggccagggagatgcttgcgacaaggatgatgacaatgatgcaatcgtggatgag
agagacaactgtcctctcctgtataaccccagacagtttgactttgataaagatgatgtg
ggggaccgttgtgataactgcccctacgaacacaaccctgcccagattgacactgaccac
aacggcgaaggagatgcctgtgctgtcgacattgatggagatgaaatcccaaatgagcaa
gacaactgtccgtacgtgtacaacaatgaccaaaaggacactgacatggatcgagtgggt
gaccagtgtgacaactgtcctctattacacaaccctgaccaggctgacacagacaatgac
cttgtaggagaccagtgtgacaacaaccaggacattgatgaagacggtcaccagaacaac
ctggacaactgtccttatgtggccaactcaaaccaggcagaccacgataaggacgggaaa
ggggacgcctgtgacttcgacgatgacaatgacggtatccctgacgatagagacaactgt
agattgacgcccaacaaagatcaactggactctgatggcgacggtagaggagacgcctgc
aaagacgactttgacaacgacaacatcccggacatccttgacgtgtgtcctgagaacaac
gccgtcaccgtcacaaacttccggaagtttcagatggtgcacctggaccccaagggaacc
acgcagatcgaccccaactgggtggttaggcatcagggcaaggagctggtgcagaccgtc
aactctgacccaggcatcgctgttggctttgatgagttcaacgcggtggactttagtggt
acgttctacgtgaatacggaccgggatgacgactacgctggttttgtgttcggctaccag
tcgagcggccgcttctacgtggtgatgtggaagcaggtcactcagacctactgggaagac
aaaccctccaaggccttcggtatctctggtgtctccctgaaggtggtcaattcaaccaca
ggcacaggggagaacctgagaaacgccctgtggcacacaggaaacactaaagatcaggtg
cgcactctttggcacgatcccaaaaacattggctggaaggattacacagcctataggtgg
cacctcatccacagacccaagactggtttcatcagggttgtggtttatgaagggaaacag
atcttggcagactcaggaccagtgtacgacaagacgtttgctggaggacggttaggcctg
tttgtgttctcccaggaactggtcttcttctccgatctcaaatacgagtgcagagatgag
ctggagtttccaactgtgttgtccatcagataa
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