KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112236442
Entry
112236442         CDS       T05605                                 
Name
(RefSeq) WD and tetratricopeptide repeats protein 1
  KO
K11807  WD and tetratricopeptide repeats protein 1
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:otw04121]
    112236442
Ubiquitin system [BR:otw04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     112236442
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd EIF3I WDR55 Beta-prop_EML WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_WDR75_1st TPR_19 Beta-prop_WDR90_POC16_2nd WD40_RFWD3 NBCH_WD40 Beta-prop_IFT122_1st TPR_2 Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_EIPR1 ANAPC3 Beta-prop_SPT8 TPR_1 TPR_17 Beta-prop_SCAP Barstar TPR_16 TPR_6 Beta-prop_IFT140_1st TPR_9
Other DBs
NCBI-GeneID: 112236442
NCBI-ProteinID: XP_024260799
LinkDB
Position
LG23:complement(5170531..5191394)
AA seq 676 aa
MTCCEAMSAVNITRDILHRQIRDKRALGFQRQYHVTDPFISRLGLEAELQGHTGCVNCLE
WNEQGDLLASGSDDQHCIIWDPFKHKKLTTMHTGHAANIFSVKFLPHSGDRILVTGAADT
KVHVHDVSVKETIHMFSDHTNRVKRIATAPMWPNTFWSAAEDGIIRQYDLRESSKCSEVL
IDLTEYCGQLVEAKCLAVNPQNNNYLAVGANGPFVRLYDMRMIHNHRKSASQSTSAGVHT
FCDRQKPIPDGAGQYYVAGHLPVKLPDYNNRLRVLVATYVTFSPDGTELLVNMGGEQVYL
FDLTFKQKPYTYLLPKKCQLTDVQNGKTTNGVSNGIHLPASRLRFAESRVFSGSGELPLH
LERIKQQANDAFARQQWTQAIQFYSLGIHEASHNAMLYGNRAAAYMKRKWDGDHYDALRD
CLKALSLNPGHLKAHFRLARCLFELKYVAEALECLDDFKGKFPEQAHSCACDALDKDIKA
ALFSKMDSAEDKKGNSSIRFHTFSRKESIPEDEVVLRERSYDYKHRYCGHCNTTTDIKEA
NFFGSKGQYIVSGSDDGSFFIWEKETANLVRILQGDESIVNCLQPHPSYCFLATSGIDPV
VRLWNPRPETESESGNGRVVEDMEGAAAANQRRMNADPLEVMLLNMGYRITGLSGRGPEG
SDDEDSSDGQVQCRPS
NT seq 2031 nt   +upstreamnt  +downstreamnt
atgacttgctgtgaggccatgtctgctgtgaacatcaccagagatatcctgcacaggcag
atcagggacaagagagcattgggcttccaaaggcagtatcatgtcacagaccccttcatc
agtagacttggactggaggcagagttgcagggccacactgggtgtgtgaactgcctggaa
tggaacgaacagggagatctgctggcatcgggctcagatgaccaacattgcatcatctgg
gaccccttcaaacacaagaagctcaccactatgcacacagggcatgcagcaaacatcttc
tctgtgaagtttctccctcactcaggtgaccgtatcctcgtgacgggtgcagcggacacc
aaggttcacgtgcacgacgtgtcggtcaaggagaccatccacatgttctccgaccacacc
aaccgcgtcaagcgcattgctacggcccccatgtggcctaacaccttctggagtgctgcg
gaggacggcatcatcaggcaatatgacctgagggagagcagtaagtgttcagaagtgctc
atcgacctgacggaatactgtggtcagctggtggaggccaagtgtttggctgtcaatccg
caaaataataactacctagcagtgggggccaacgggccctttgtacgcctctacgacatg
cgcatgatccacaaccacaggaagtctgcgagtcagagcacatcggcaggagtgcacaca
ttctgcgacaggcagaagcccatcccagacggagcggggcagtattatgtcgcagggcac
ctgccagtgaagctccctgactacaataaccgcctgagggtcctagtggccacctacgtc
accttcagccccgacggcaccgaactgctagttaacatgggaggagaacaggtgtatcta
tttgacttgacgttcaaacagaagccgtacacctatctgcttcccaaaaagtgccaatta
acagatgttcagaatggaaagacaaccaacggtgtgtcaaatggaattcacttgccagcc
agccgacttcgattcgcagaaagcagagttttctctggttctggcgagctgcctcttcac
ttggagcggataaagcagcaggccaacgacgcgtttgcgcggcagcagtggacgcaggcc
atccagttctacagtctgggcatccacgaggccagccacaacgccatgctgtacgggaac
cgcgccgccgcctacatgaagcgcaagtgggacggtgaccactatgatgcgctgagggat
tgtctgaaagccctgtccctcaaccctgggcacctgaaggcccacttccggttggcacgc
tgcctctttgagctgaagtatgtggccgaggctctggagtgcttggatgacttcaagggc
aagttccccgagcaagcccacagctgcgcctgcgatgccctagataaggatatcaaggcc
gccctcttctccaagatggactctgctgaggacaaaaagggcaacagctcaatccgcttc
cacacgttcagcaggaaggagtccatcccggaagacgaggtcgtcttgagagagcgcagc
tacgactacaaacaccgctactgtggtcattgtaacaccaccacagacatcaaggaggcc
aacttctttggcagtaaaggccagtacattgtgagcggctccgacgacggctcctttttc
atctgggagaaggagactgctaacctggtgcggatcctccagggggacgagtccatagtc
aactgcctgcagcctcaccccagttactgcttcctggctaccagcggcatcgaccctgtg
gtgcggctctggaaccccaggccggagacggagagtgagagtgggaacgggcgcgtggtg
gaggacatggagggcgccgctgcagccaaccagcggcgtatgaatgccgaccccctggag
gtcatgctgctcaacatgggttaccgcatcacgggcctcagcggccgcgggccagagggc
tcggacgatgaggacagctcagacggccaggtgcagtgccggcccagctag

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