Oncorhynchus tshawytscha (Chinook salmon): 112236465
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Entry
112236465 CDS
T05605
Symbol
nod1
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1 isoform X1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04621
NOD-like receptor signaling pathway
otw05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
112236465 (nod1)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112236465 (nod1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
otw04054
]
112236465 (nod1)
Pattern recognition receptors [BR:
otw04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
112236465 (nod1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
CARD
LRR_4
LRR_6
NOD2_WH
AAA_16
NPHP3_N
AAA_22
AAA_30
AAA_18
NTPase_1
AAA_7
RNA_helicase
Sigma54_CBD
Motif
Other DBs
NCBI-GeneID:
112236465
NCBI-ProteinID:
XP_024260826
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All DBs
Position
LG23:18221840..18229127
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AA seq
954 aa
AA seq
DB search
MYIMDSSAEEARAGLTGHVSTVQMLTLHRELLVSQVKSTQCIMDNLLQSGFLCIEDAEII
QRAATKTDQVRKILELVQRKGVQACEYFLYILYKVYDAYIDLQPWLKEINYQPPDFIRDI
PVKNTDPISRYCEKLRHELGRDTRFIASYAQREETLLEELYTDTLMELLNDRNESLGHLE
GLGQLLGEQGVFNSQAETVLVTGDAGVGKSILLQKLQRLWSKRELEQTDAMFFFKFRCRM
FSTFKETDEISLRDLLFKYNCYPDQDVDNEVFSYILRFPEKVLFTFDGYDEIQADLDLVN
VPEVVSPEERTHPLLVLINLLCGKLLNGSRKVLTARTGTDVQSRVIRKRVALRGFSPAHL
QTYTNLHFKEQEHRDLVSVQLDASPHLCGLCSIPLFCWIVFKSFKHLRSVYDDFELPEAC
VTLTNIFLLLSEVFFSRGATPPPVLLKRNTRCPADTFRAGLRPLTAFSKLALLGMERGGF
VFDQEEVASCGLTDDDLKVGFLRPVSRYDACENPSTFEFLHLTLQSFLAAFSLVLDEQAS
VGNILKFFTECSRRGNTSCLSCVVHCISGSSKPRGKDPFKTNEHLQYANLFLCGLLSKAN
ADLLEHMVPAALLKRKRAVLKSYLSTSVRSHLRGLPLYNTEQEGSKVHVLPNFLWMLRCI
FETGSKEVAQLTAKGITADYIKLGYCNVFSGDCSALNFVLQHRRKRLGVDMDNNNISDYG
VKQLRPSFSKMTVVRLCVNQISDSSVEVLAEELIKHRVVEVLGLYNNHITDIGAKLIAHI
IEECPKLRVVKLGSNKFTSMGGKYLASAIQKSTSIFDVGMWGNSIGDEGARAFAEALRNH
PSLTNLSLSANGITSEGGRSLAEALKGNTMLRIFWLVQNELSDDVAPDMAELIRSNTGLS
HLWLINNQLTVGGIRQLSEALSHNTSLKEISLKGNCLSEEEEKLFEAEGRLRFH
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgtatattatggactccagtgccgaggaagcccgtgctggactaacaggccatgtgtcc
actgtccaaatgctcaccttgcaccgtgagctactggtttcccaggtgaagagcacgcag
tgcattatggataacctcctacaaagtggttttctgtgtatcgaggatgcagaaatcatc
cagcgcgcagccaccaagacagaccaggtgcgtaaaatcctggaattggtccaaaggaaa
ggggtgcaggcatgtgaatacttcctatatattctctacaaagtttatgatgcatacata
gacctccaaccatggcttaaagagatcaactaccagccaccagacttcatacgggacata
ccagtgaagaacacggaccctattagtaggtactgtgagaagctgaggcacgagctgggc
cgagacacacgcttcattgcctcctacgcccagcgagaggaaaccctgttggaggagctc
tatacagacaccctgatggagctcctgaatgaccgcaatgagagcctgggccacctggag
ggtctggggcagctcctgggagagcagggtgtctttaactcacaggcagagacggtgctc
gtcacgggagacgctggggtgggcaagtccatcctcctccagaagctccagaggctgtgg
tccaagagggaactggaacagacagacgccatgttcttcttcaagttccgctgtaggatg
ttcagcactttcaaggagacagacgagatctcactgagggacctgcttttcaaatacaac
tgctaccctgaccaggatgtggataatgaggtgttcagctacatcctccgcttccctgaa
aaggttctctttacgtttgacggctatgatgagatccaggctgatctggacctggtgaat
gtgcctgaggtggtttctccagaggagaggactcacccccttctggtgctcattaatctg
ctctgtgggaagctgctcaatggttcccggaaggtcctgacggctcggacaggcaccgac
gtccagagcagggtgatccggaagagggtggcgctgcgtgggttctctccggcccacctt
caaacctacaccaacctacacttcaaagagcaggagcacagggacctggtctcagtccag
ctggatgccagcccccacctctgtggcctctgctccatccccctcttctgctggatcgtc
ttcaagagctttaaacacctgcgctcagtctacgacgactttgagttgccagaggcttgc
gtgaccctcactaacatattcctcctgctgtctgaagtcttcttcagccggggggccact
cccccacctgtcctcctgaagagaaacaccaggtgccccgctgataccttcagggcagga
ctgaggccactgactgccttctccaagctggctctgctgggcatggagagaggaggcttt
gtgttcgaccaggaggaggttgcctcctgtggcctgactgacgatgaccttaaggtgggt
ttcctccgaccggtcagccgctacgatgcatgtgaaaacccttccacctttgagttcctt
cacctcaccctgcagtccttcttggctgcattctccctggttctggatgaacaggccagc
gtaggaaacatcctcaagttcttcaccgagtgcagcaggaggggcaatacttcttgttta
tcgtgtgtcgtccactgcatcagtggctcctccaaacccaggggaaaggacccgttcaag
accaacgagcatctccaatacgccaacctcttcctgtgtggactgctgtctaaggccaac
gccgacttgctggagcacatggttcctgcagcactactgaagagaaagcgggcggtcctc
aagtcctacctgtccaccagcgtgagatcccacctccgcggtttgccactctacaacaca
gagcaggagggcagcaaggtgcatgtcctgcccaacttcctgtggatgctgcgctgcatc
ttcgagacaggaagtaaagaggtggcacagctgactgcgaagggcatcacagctgactac
atcaagctgggctactgtaatgtgttctctggcgactgcagtgccctcaactttgtgctg
cagcaccggcggaagaggctaggggtggacatggacaacaacaacatcagtgactatggg
gtcaagcagctcaggccttcattcagtaagatgaccgtggtgagattgtgtgtcaatcag
atctcagacagcagtgttgaggtactggctgaggagcttatcaaacacagagtggtggag
gttctgggactttacaataatcacattacggacatcggagccaagctaatcgctcatatc
attgaggaatgtcctaagttaagagtcgtcaagcttggcagcaacaagttcaccagtatg
ggtggcaagtatctggccagcgccattcagaagagcacatctatctttgacgtgggaatg
tgggggaacagtattggtgatgaaggagcaagagcattcgcagaggccctgaggaatcac
ccaagtcttaccaacctcagcctctcagccaatggcatcacttcagaaggtgggaggagc
ttggccgaagcactgaaaggcaacacaatgctcagaatcttctggttggtgcaaaatgag
ttgtcagatgatgtagcaccagacatggcagagctgatcagatccaacactggtctatct
cacctctggttaatcaataatcagctgacagtgggtggaatcagacagctgtcagaggct
ctctcccacaacacatcactcaaagagatcagtttgaaaggaaactgtctttctgaagag
gaagagaagctgtttgaggcggagggaaggctacgcttccactga
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