Oncorhynchus tshawytscha (Chinook salmon): 112236487
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Entry
112236487 CDS
T05605
Name
(RefSeq) cytoplasmic polyadenylation element-binding protein 4-like isoform X1
KO
K02602
cytoplasmic polyadenylation element-binding protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04114
Oocyte meiosis
otw04914
Progesterone-mediated oocyte maturation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09143 Cell growth and death
04114 Oocyte meiosis
112236487
09150 Organismal Systems
09152 Endocrine system
04914 Progesterone-mediated oocyte maturation
112236487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112236487
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
112236487
Factors involved in mRNA localization
Trans-acting binding proteins
112236487
mRNA cycle factors
P-body specific factors
112236487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_7
CEBP_ZZ
RRM_1
zf-U1
Motif
Other DBs
NCBI-GeneID:
112236487
NCBI-ProteinID:
XP_042165063
LinkDB
All DBs
Position
LG30:complement(41558211..41599848)
Genome browser
AA seq
726 aa
AA seq
DB search
MGDYGFGVLVQNNTGNKSAFPVRIHPHLQPPHHHQNASPSPAAFINNTTSGNGSSSGSPW
LFSATAAHSSMQDEILGSEKPKAQQQEMQETQEKQQLSPGHQESVIISELEKARSEENKV
EGSPSEGSNGKEKLRLESPVLTGFDYQETSGLGAPAQSSTSSSLTGFNNWSAAISQTPST
IINEDVSFFNPAASANNGALLFQNFSHHTSPGFGGNFSPQIGPISQHHPPHPHFQHPHNQ
HQQHRRSPASPHPPPFPHRNAAFSQLPHLSNNLNKPPSPWGSYQSPSPSPSSTSWSPGGG
YGGWGGSQGREYRRGLNGGMTPLNSISPLKKTFPNNHVPSQKYSRTSPGFNPKSWMDESV
SRSDNIFPFQERTRSFDGFNMHSLENSLIDIMRAEQDTLKGRLGFTHPGGESPLPINARN
YGRRRGHSSLFPMEDGFPDDERGEQSLPGLGSPHCFPHQNGERVERYSRKVFVGGLPPDI
DEDEITASFRRFGHLFVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIEACIEEDGKLY
LCVSSPTIKDKPVQIRPWNLNDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRL
YGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLD
DQLCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRH
ISFRWN
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgggggattacgggtttggagtcttagtgcaaaacaacactggcaacaagtctgcattc
ccagttagaattcacccacatctgcaacctccacatcatcatcagaatgcgtctccaagc
cctgctgctttcataaacaataccacatctggtaatggcagtagcagtgggtcgccttgg
cttttttcagccacagctgcccacagcagcatgcaagatgaaattcttgggtctgaaaaa
cccaaagcccagcaacaggaaatgcaagaaacgcaagaaaagcagcaactgtcccctggc
caccaggagtctgtaatcatatctgagttagagaaggcgaggtccgaggagaacaaggtg
gagggcagcccctcagagggtagcaatggaaaggagaagctgcgcctcgagtccccagta
ctgacaggcttcgactaccaagagacatcgggtcttggggctccggcccagtccagtacc
tcctcgtccctgaccggcttcaacaactggtcagcggctatttcccagacaccctccacc
atcatcaacgaggatgtcagcttcttcaacccagctgcatctgctaacaatggggccctc
ctgttccagaatttctcccaccacaccagcccaggctttgggggaaacttctccccccag
attggacccatctcccagcaccatcccccacatccacactttcagcacccacacaaccaa
caccaacagcaccgcaggtccccggccagcccccaccctcctcccttcccccacaggaat
gctgcgttcagccagttgccgcatttgtccaataatctgaataaacccccgtcaccttgg
ggtagctaccaaagcccttctccttctccctcttctacctcctggagtcccggcgggggc
tatggtggctggggaggctcccaggggcgtgagtaccgtcggggcctcaacggaggcatg
accccactgaactcaatctccccactgaagaaaacattccccaacaaccacgtgccgtcg
cagaagtactcccgcaccagccctgggttcaaccccaaatcctggatggacgagagtgtg
agcaggagtgacaacatctttcccttccaggagcgcaccagatcctttgatggcttcaac
atgcattccctggagaactctctcattgacatcatgagggccgagcaagataccctgaaa
ggtcgcctaggattcacccatccagggggagaaagtcctctgcccataaatgcaaggaat
tatgggaggagacgaggtcactcttccctgttccccatggaggatggtttccctgacgac
gagcgtggtgagcagagcctgcctggccttggctcgccccactgtttcccccaccagaat
ggggagcgtgttgagcgttactcccgcaaggtctttgtcggtggcctcccgccagatatt
gatgaagatgaaataactgcaagtttccgtcgctttggacacctctttgtggactggcct
cacaaggcagagagcaaatcttacttccccccgaaaggttatgccttcctgctgttccag
gatgagagctctgtgcaggccctgattgaagcctgtattgaagaggacggcaagctctac
ctgtgtgtgtctagccccaccatcaaagacaagccggtccagatccgtccctggaacctg
aacgacagtgactttgtgatggacggctcccagcctctggaccccaggaagaccatcttt
gtgggtggggtgccacgccctctccgtgcagtggagctggctatgatcatggacaggctg
tatggaggcgtgtgctatgcaggcatcgacacagacccggagctcaagtaccccaaggga
gcagggcgggttgccttctccaatcagcagagctacatcgctgctatcagcgctcgtttt
gtccagctgcagcatggagaaatcgataaacgggtggaagtgaagccatatgtcttggac
gaccagttgtgtgatgagtgtcagggaactcggtgcgggggcaagtttgcccctttcttc
tgcgctaacgtcacctgtctccagtattactgtgaatactgctgggcggccatccactca
cgcgctggtcgggagttccacaagccactggtcaaggagggaggggaccggcctaggcac
atctccttccgctggaactga
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