Oncorhynchus tshawytscha (Chinook salmon): 112236519
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Entry
112236519 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: spastin-like
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112236519
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112236519
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
112236519
Membrane trafficking [BR:
otw04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
112236519
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
112236519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
Vps4_C
AAA_22
AAA_5
TIP49
TniB
MIT
Mg_chelatase
IstB_IS21
AAA_16
AAA_14
nSTAND3
DUF815
AAA_2
AAA_24
Bac_DnaA
AAA_21
Motif
Other DBs
NCBI-GeneID:
112236519
NCBI-ProteinID:
XP_042161605
LinkDB
All DBs
Position
LG24:31494986..31515044
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AA seq
477 aa
AA seq
DB search
MSAKVRAGDSNDNGEIIRNYHKRAFEYISVALKIDEDDKGVKEEAVQWYQKGIAELQRGI
AIEVTGQGEHCDRSKRLQTKMINNLTMAKDRLALLEGTSASKTSHSPQSPPGHLPTPPVR
PTGPKNKPGPGPGHSKPASTGSSRTNNIKVVPRAAGRGQNGRPAASKEPQKRDMKNFKNV
DSKLASFILNEIVDGGSSVSFEDIAGQELAKQALQEIVILPALRPELFTGLRXPARGLLL
FGPPGNGKTMLAKAVAMESHATFFNISASSLTSKWVGEGEKLVRALFAVARELQPAIIFI
DEIDSLLCERREGEHDASRRLKTEFLIQFDGVQSEGAERVLVMGATNRPQELDEAVLRRF
AKRVHVSLPTEETRFKLLKNLLGKHGHPLNQKELAHLAKMTGGYSGSDLTSLAKDAALGP
IRELGPEQVKNMAASDMRNIRCKDFEDSLKRIKPSVSPTTLDLYVRWNTDYGDTTAF
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccaaagttagggcgggggacagcaacgacaacggagaaatcattagaaactac
cataaacgagcatttgaatacatatccgtggcactaaagatcgatgaagatgacaaaggt
gtcaaggaggaggcagtacagtggtatcagaaaggcattgcagagcttcaaagggggatt
gctattgaagtcacaggacaaggagaacattgtgatcgttcgaagaggcttcaaactaag
atgatcaacaatctcaccatggcaaaggaccgactcgctcttctagaaggtacatcggcg
tctaaaacgagccacagccctcagagtccaccaggccatctccctacccctccagtgagg
cctactggtccaaagaacaagccaggaccaggaccaggtcacagtaagccagcaagcact
ggctcaagcaggaccaacaatatcaaggttgtccctcgggctgcagggagaggacagaat
ggtagaccagcagcatcgaaggaaccacagaagagggatatgaagaacttcaagaatgtg
gacagcaagttggccagcttcatactgaatgaaatcgtagacggtgggtcgtcagtgagc
tttgaagacatagcgggtcaggagctggctaaacaagctcttcaggagatagttatcctg
cctgcactcagacctgagctgttcactggtctcagantcccggcacgaggtctgctcctc
ttcggtcccccaggcaacggaaagaccatgctggccaaagcagtagccatggagtcccat
gccaccttctttaacatcagtgcttccagtctgacctctaaatgggtgggagagggagag
aagctggtcagagctctgtttgctgtggccagagaactacagcctgccatcatcttcatt
gatgagatcgacagcctgctctgtgagagacgggaaggagaacacgatgccagtcggcgt
ttaaagacagagtttctcatacagtttgacggggtgcagtcggaaggggcagagagggtt
ctggtgatgggagctacaaacagaccacaggagctggacgaagctgtgctcaggcgattt
gccaaaagggtgcatgtgtccttaccaacagaggagacgcgtttcaagttgctgaagaat
ctattgggaaagcatggacacccactcaatcagaaggaattagcccatctagcaaaaatg
acggggggctattcaggaagtgatcttacatcgttggctaaggatgctgctcttggacca
atcagggaactgggaccagagcaagtgaaaaacatggctgctagtgatatgcgtaacatc
cgctgcaaggactttgaggattctctgaagcgtattaagcccagtgtcagtcccacaacc
ctggacctctatgtacgatggaacactgactacggagacactacagccttctag
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