Oncorhynchus tshawytscha (Chinook salmon): 112236538
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Entry
112236538 CDS
T05605
Name
(RefSeq) dynein, cytoplasmic 1, intermediate chain 2a isoform X1
KO
K10415
dynein cytoplasmic 1 intermediate chain
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04145
Phagosome
otw04814
Motor proteins
otw05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112236538
09142 Cell motility
04814 Motor proteins
112236538
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112236538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112236538
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112236538
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Motor proteins
Dynein complex
112236538
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
112236538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_EML
WDR55
Dynein_IC2
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_NUP159_NUP214
ANAPC4_WD40
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_IP5PC_F
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
112236538
NCBI-ProteinID:
XP_024260902
LinkDB
All DBs
Position
LG03:43939569..43960457
Genome browser
AA seq
629 aa
AA seq
DB search
MSDKSELKAELERKKQRLAQIREEKKRKEDERKKKEADSKKDAAPMDDSDLEKKRRETDA
LLQSMGITSADVPVVPPPMSPTCKSVGTPSEAGSQDSGDGAVGPRTLHWDSDPSTLQLHS
DSELRRGPLKMGMAKITHVDFPPKETVSYTKETQTPVMTQQKEEEEEEEEEVAPPQQVLE
AQTEKPVQKEEEEAPPQELTEEEKLQILHSEQFITFFDHSTRIVERALSEHVDVFFDYSG
REMEEKEGEIQAGAKLFLNRQFMDERWSKHRVVTCLDWSAQYPELLVASYNNNEEAPHEP
DGVALVWNMKYKKNTPEYVFHCQSAVMSAAFAKFHPNLVVGGTYSGQIVLWDNRSNKRTP
VQRTPLSAAAHTHPVYCVNVLGTQNANNLISISTDGKMCSWSLDMLSQPQDSLELVLKQS
KAVAVTSMSFPLGDVNNFAVGSEDGSVYMACRHGSKAGISEMFEGHHGPITGIDCHTATG
PVDFSHLFVTSSFDWTVKLWSTKNNKPLYSFEDNSDYVYDVMWSPTHPALFACVDGVGHL
DLWNLNNDTEVPTASTTVEGNPALNRVRWAHSGKEIAVGDSDGQILVYDVGEQIAVPRND
EWTRFVRTLAEINENRDDAEELAAQRLSA
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaaaagcgagctaaaagcggaacttgaaaggaagaagcaacgcctggctcag
atcagggaggagaaaaaaaggaaagaagatgagcgcaaaaagaaagaggctgactcgaag
aaagatgcagccccaatggatgactcagacttggagaaaaagagacgtgagacagatgcc
cttctgcagagcatgggcatcacgtcagctgatgttcctgttgtccctcctcccatgtct
ccaacctgcaaatctgtgggcacaccaagcgaggcagggagccaagactcgggcgacggc
gccgtgggacccaggactctccactgggactctgacccgtccactcttcagcttcactct
gactctgagctgcggcggggacctctgaagatgggcatggccaagatcacccatgttgac
ttccctccaaaagagactgtgtcgtacaccaaggagacccagacacctgtgatgacccag
cagaaagaagaggaagaagaagaggaggaggaagttgctccaccacaacaagtgcttgag
gcccaaacagagaaacctgtccagaaagaggaggaggaagcacctccgcaagagctgacc
gaggaggagaagctgcagatcctccactctgagcagttcataaccttctttgaccacagc
acccgcatcgtggagcgggccctgtctgaacatgtggacgtcttcttcgactacagtggt
cgcgagatggaggagaaggagggtgagatccaggcaggggccaagctgtttttgaacagg
cagtttatggacgagcgctggtccaagcaccgtgtggtcacctgtctggactggtccgct
cagtatcctgagctgctggttgcctcatacaacaacaacgaggaagccccccacgagccg
gacggggtggccctggtctggaacatgaagtacaagaagaacacgccggagtacgtcttc
cactgccagtctgcagtgatgtcggccgcctttgccaagttccaccctaacctggtggtg
gggggcacctactcagggcagatcgttctgtgggacaaccggagcaacaagaggacccct
gtacagaggacccccctgtcagccgcagcacacacgcacccagtgtactgtgtgaacgtg
ctgggcactcagaacgccaacaacctcatcagcatctctaccgacggcaagatgtgttcc
tggagcctggacatgctgtctcagccgcaggacagcctggagctggtgttgaagcagtcg
aaggccgtcgctgtcacctccatgtctttccccctcggggatgtcaacaactttgcggtg
gggagcgaggacggttctgtctacatggcgtgtcgtcatggaagtaaagcagggatcagt
gagatgtttgagggccaccacgggcctatcacagggatagactgtcacacagcgaccggg
cccgtcgacttctcccacctgtttgtcacctcctccttcgactggaccgtcaagctgtgg
agcactaagaacaacaagccgctgtactcgttcgaggacaactcggattacgtctacgat
gtcatgtggtctcccactcacccggcgctgtttgcgtgtgtggatggagtgggccatctt
gacctgtggaacctcaacaatgacactgaggttcctacagccagtaccacagtggagggg
aacccagccctgaaccgcgtgcgatgggcccattccggcaaagagattgccgtgggagac
tctgatggacagattctggtctatgatgttggagagcaaatcgccgttccacgcaacgac
gagtggacccgtttcgtccgaaccctggcggagatcaacgagaaccgggacgacgcagag
gagctggccgctcagcgcctctctgcctga
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