Oncorhynchus tshawytscha (Chinook salmon): 112236561
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Entry
112236561 CDS
T05605
Name
(RefSeq) protein jagged-1b isoform X1
KO
K06052
jagged-1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04330
Notch signaling pathway
otw04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
112236561
04371 Apelin signaling pathway
112236561
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
otw04090
]
112236561
CD molecules [BR:
otw04090
]
Proteins
112236561
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
MNNL
DL-JAG_EGF-like
DSL
EGF_2
JAG1-like_EGF2
EGF_CA
Motif
Other DBs
NCBI-GeneID:
112236561
NCBI-ProteinID:
XP_042161592
LinkDB
All DBs
Position
LG24:31118115..31232975
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AA seq
1260 aa
AA seq
DB search
MILRRGSVVGVADFCLHALLLCFCAKVAEGTGQFELEILSMNNRNGELLSGLCCDGSRIT
GDRKCRMDECDTYFKVCLKEYQSRVSAAGPCSFGSGSTPVLGGNTFSLKNSAKNERSKIV
LQFSFAWPRSYTLIVEALDANNDTSGGDGQVIEKSSHSGMINPSLQWQKLSHNGPIGQFD
YQIRVSCDEHYYGFGCNKFCRPRDEFFGHYTCDYNGNKTCLEGWSGLECNTPICRQGCST
EHGHCKEPGDCKCLYGWQGQYCDQCNPHPGCVHGTCVEPWQCLCDTNWGGHLCDKDLNFC
GTKQPCLNGGTCSNTGPDKYQCSCVEGYSGVNCERAEHACLSEPCSNGGSCVETSLGYEC
VCSPGWSGPSCSINVDECSPNPCNHGGTCQDLVHAYKCLCPPQWTGKTCLIDANECDSKP
CVNANSCRNLIGGYFCECVPGWTGQKCDININDCKDQCQHGGTCRDLVNGFRCVCPAGYS
GDHCERDVDECAGSPCLNGGRCQDQVNGFTCLCLPGFSGQLCQLDIDYCLVNPCQNGAAC
YNLATGHYCACSDDYEGKNCSHLKDHCHTSTCKVIDSCTVAVGSNSTPGGERYISSNVCG
PHGRCRSQAGGQFSCDCQEGFRGTYCHENINDCESNPCGNGGTCIDKVSVYQCICGDGWE
GDHCETNIDDCSTSPCHNGGTCRDLVTDFFCECMNGWKGKTCHSRESQCDEATCNNGGTC
HDEGDTFQCKCSPGWEGATCNIAKNSSCLPNPCEYGGTCVTIGDSFTCVCKEGWEGDTCK
QNTNDCNPHPCYNSGTCVDGDNWYRCECAPGFAGPDCRININECQSSPCIFGSSCIDEIN
GYRCLCPQDRAGPRCQEVTQRPCSVNGRLTPEGAKWDEDCNTCQCFNGKVVCTRMWCGPK
SCRVSGGVKGRGSGGGGAGCRSGQSCVPIREEQCFVRPCLNLGECLPSSPPTTKCHPSSG
YHDNSCSNITFTFTKETMPRGLSIEAVCKQLRQLYVLNNVSSEYSVSITCDPSTSASNEI
HLSIYTEAHPMDRSPIKEITDRLADLVSKHHGNNSIISAIAKVRVQRRPSASQTDYLVPL
LSSVFILLWILALVSVFLYCVRRRRKHGSHHGNGALSSAATDDNTTNNVREQLNQIKNPI
NEKHAGGGGHLTTSVAIKDYEDKNSIIAKVRTHHPPEGEEDNDKERHMGNKGRFAVPAKQ
PAYTLVEREDWGLNGGLGANGPNEGDGRTPVQPSSKHWTNKQDNRALETAHSMNRMDYIV
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atgattttgagaaggggctccgttgttggcgttgctgatttttgcttacatgccttattg
ttgtgcttttgtgcaaaggtggccgagggaaccggtcagttcgagttggagatcttatcg
atgaacaaccggaacggcgagcttcttagcgggctgtgttgtgacggctcgcggatcacc
ggggatcggaaatgcaggatggatgagtgtgatacgtattttaaagtgtgtttgaaggaa
taccagtcgcgggtttcggctgcgggaccttgcagcttcgggtccggttctacccctgtc
cttggagggaatacattttctttgaagaactcggcgaagaacgaaagatccaagatagtt
ttgcagttcagtttcgcctggccgaggtcctacacgttgatagtggaagccttggacgct
aacaatgacaccagcggtggtgatggtcaggtgattgagaagtcgtcccactctgggatg
atcaaccccagcctacagtggcagaagctcagccacaacggtcctattggtcagtttgac
tatcagatccgggtcagctgtgacgagcactactatggcttcggatgcaacaagttctgt
cgaccccgagacgagttcttcgggcactacacctgcgactacaacgggaacaagacctgt
ctggagggctggtctggactagaatgtaacacacccatttgtcggcagggctgcagtact
gaacatggacactgcaaagagccaggtgactgcaagtgtctgtatggctggcaggggcag
tactgtgaccagtgtaatcctcaccctggctgtgtccatggaacctgtgttgaaccatgg
cagtgtctatgcgataccaactggggaggacatctctgtgacaaagatctgaacttctgt
gggaccaaacagccctgtctgaacggaggaacctgcagcaacacgggacctgacaaatac
cagtgttcctgtgttgagggctactctggagtcaactgtgagagggcagagcatgcatgt
ctgtctgagccctgctctaatggagggagctgtgttgagaccagtctgggttatgagtgt
gtctgttccccgggctggagtggaccctcctgtagcatcaatgttgatgagtgctctcct
aacccctgtaaccacggtggcacctgtcaggatctggttcatgcttataagtgtctctgt
cctcctcagtggaccggcaagacctgcctcatcgacgccaacgaatgcgacagcaagccc
tgtgtcaacgccaactcttgccgcaacctgattggtggatacttctgcgagtgcgttcct
ggttggacgggacagaaatgtgacatcaatatcaatgactgcaaggaccaatgccagcac
ggaggaacctgcagggacttggtgaacgggttccgctgtgtgtgtcctgcgggttactct
ggagaccactgtgagagagatgtggatgagtgtgccggctctccctgtctgaacggcggg
cgatgccaagaccaggtcaacggattcacctgcctctgtctgccaggattctcgggacaa
ctctgtcagttggacatagactactgcctcgtcaacccatgtcagaatggagccgcatgt
tacaacctggctacaggtcactactgcgcctgttcagacgactacgaaggaaaaaactgc
tctcacctcaaagaccactgtcacaccagcacgtgcaaagtgattgacagctgcacggtt
gccgtgggatccaacagtacccctggaggagagcggtacatctcctccaacgtgtgtggt
cctcacggacgctgtcggagccaggctggaggacagttcagctgtgactgtcaggagggc
ttcagaggcacatactgtcacgagaatattaatgattgtgagagcaacccgtgtggtaac
ggaggaacctgtatagataaagtcagtgtgtaccagtgtatctgtggagacggctgggag
ggggaccactgcgagaccaatatagatgactgcagcactagtccatgccataatggagga
acatgtcgagacctggtgactgatttcttctgtgagtgtatgaacggctggaaggggaag
acctgccactcccgtgagagccagtgtgacgaggctacctgtaacaacggagggacatgc
catgacgagggagacaccttccaatgcaagtgttcccctggatgggagggggctacctgt
aatatagctaagaatagcagctgtcttcctaacccctgtgagtacgggggaacctgtgtg
accatcggggactccttcacctgcgtctgcaaggagggctgggaaggagacacctgtaaa
cagaataccaacgactgcaacccacacccatgttataacagtgggacctgtgtagatggt
gataactggtatcgatgtgaatgtgctccaggcttcgctgggccagactgcaggatcaat
atcaacgagtgccagtcttctccctgtatctttggttccagctgtattgatgagatcaat
ggctatcgctgcctgtgtccccaagacagagctggaccacgctgtcaggaagtgacacag
aggccgtgctcggtgaacggtcgtctgacccctgaaggagctaagtgggatgaggactgc
aacacctgtcagtgttttaatgggaaggtggtgtgtaccaggatgtggtgtggtcctaag
tcgtgccgggtcagcggtggggtcaaaggtcgaggcagcggaggtggcggagccgggtgt
cggtctggtcagagctgtgtaccaatcagggaggagcagtgttttgtccgaccgtgtctg
aatcttggggagtgcctcccctcctccccaccaaccaccaaatgtcaccccagctccggt
taccacgacaacagctgttccaacatcacgtttacgttcaccaaggagaccatgcccagg
ggtctgagtatcgaggcagtgtgtaagcagctgagacaactctatgtgctgaataatgtg
tcctctgagtattctgtttccataacctgtgacccttcgacctccgccagcaacgagatc
catctcagcatctacacagaggcccacccgatggacagatcccctataaaggagataaca
gataggctcgccgatctggtgtctaaacaccatggcaataacagcatcatcagcgccatc
gccaaggtccgtgtgcagcggaggcctagcgcaagccagacggactacctagtacccttg
ctgtcctctgtcttcattctcctctggatcctggcgttggtctcggtcttcctctactgc
gtgcgtcgccgtcggaaacatggcagtcaccatggcaacggagccttgtcgtccgcggca
accgacgacaacacaaccaacaatgtgcgtgagcagctcaaccagatcaagaacccgatc
aacgagaaacacgccggaggcggcggccatcttacaacatcggtggccatcaaggactac
gaggataagaactcgatcatcgccaaggtacggacgcaccaccccccggagggggaggag
gacaacgataaagagagacatatggggaacaaaggacgctttgcggttccagccaaacaa
cccgcctacacactggtggagcgggaagactggggcctcaatggaggcctgggggccaac
gggcccaacgaaggggacggcaggaccccggtgcagcccagctccaaacactggactaat
aaacaggacaacagagccctggagacggcacacagcatgaacaggatggactacatcgta
tag
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