Oncorhynchus tshawytscha (Chinook salmon): 112236686
Help
Entry
112236686 CDS
T05605
Name
(RefSeq) homeobox-containing protein 1-like isoform X1
KO
K24885
homeobox-containing protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112236686
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
112236686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
DUF494
AbiJ_NTD3
HTH_31
HTH_26
HTH_37
Motif
Other DBs
NCBI-GeneID:
112236686
NCBI-ProteinID:
XP_042156978
LinkDB
All DBs
Position
LG18:39733864..39750837
Genome browser
AA seq
502 aa
AA seq
DB search
MSHYTDEPRFTIEQIDLLQRLRRTGMTKQEILHALDTLDRLDREHGDKFGRRTSSSYGGG
ANSSVSDPNSTTTNNNNNNNPASVSAATTSSTTSSSCGSNHNNGGSSNVNMALASSSTNS
TATQTQYLPPRGGLSPSPSNGYDTSPPPGPPPPSAILSSPVSLVAMVQNGGRDSLAATPN
GKLSPPRYPMNSAAAVRPFGFEATEEELDIDDKVEELMRRDSSIVKEEIKSFLGNRRISQ
AVVAQVTGISQSRISHWLLQHGSDLSEQKKRAFYRWYQLEKTTPGATLNMCPAPMALEEM
EWRQTPPPISTAPGSFRLRRGSRFTWRKECLAVMESYFNDNQYPDEAKREEIANACNAVI
QKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIEATILESHGIDVQSPGGHSNSDDID
GGDYTEQACDLPYFDKRPMARPFGFYRLEPTSPTQDDGPGHGDHQDPISLAVEMAAVNHT
ILALSRTGGVPSDIKTEALDDD
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgtctcattacacagacgagcctcgcttcaccatcgagcagatcgacttgctccagagg
ctgcggcgtacgggcatgaccaagcaagagatcctccacgccctggacaccctagaccgg
ctggaccgcgagcacggggacaagttcggtcgtcgcacctcctcctcctacggaggagga
gcaaatagctctgtgtccgaccccaatagcaccaccacaaacaacaacaacaacaacaac
cctgcctctgtttctgccgccaccacctcctcaacaacatcctcttcctgtggtagtaat
cataataatggtggaagcagtaatgttaacatggccctggcctcatcctccaccaactct
accgccacacagacacagtacctccctccacgtggggggctctccccgtcgcctagcaac
ggctacgacacctccccaccacccggcccgcccccgccctctgccatcctctcgtccccg
gtgtcgctggtcgccatggtgcagaacgggggtcgggacagcctggcagcaacgcccaat
gggaagctctcgccgcctcggtacccaatgaatagcgctgctgccgtcaggccgttcggg
ttcgaggccacggaggaggagctggacattgatgacaaggtggaggagctcatgaggagg
gacagcagtatcgtcaaggaggagatcaagtcctttctgggaaacaggagaatctctcag
gctgtggtggctcaggtcacaggtatcagtcagagcaggatctctcattggttgctccag
cacggctctgatctcagcgaacagaagaagagagctttctaccgctggtaccagctagag
aaaactaccccaggtgccactctaaacatgtgccctgcccccatggctctggaggagatg
gagtggagacagaccccaccccctataagcaccgcccccgggagcttccggcttcggcgt
gggagtcgctttacctggaggaaggaatgtctggctgtgatggagagctacttcaatgac
aaccagtaccccgacgaagccaagagagaggagatcgccaacgcctgcaacgcggttatc
cagaaaccagggaagaagctttctgacctggagagagtcacatccctcaaagtctacaac
tggtttgccaaccgacgcaaggagatcaagagacgggctaatattgaagccacgatcttg
gagagccatgggatagacgttcagagtcctggaggacattccaacagcgacgacatcgat
ggaggcgactacacagaacaggcttgtgacctgccctacttcgacaagagacccatggcc
agaccctttggcttctacaggctggagcccacttcacccacacaggatgatggtccaggc
catggagaccaccaggaccccatctctctggccgttgagatggcagcagtcaaccacacc
atcctggctctttcccggaccggaggggtgcccagcgacatcaagacagaggccctggat
gatgactaa
DBGET
integrated database retrieval system
